-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_282

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_282-snap.2-T1
Valid prediction for GeneMark_model.107176_t
Couldn't classify 8025, 8118
Sorry, prediction GlimmerHMM_glimmerT_61630-T1 fails validation.
(ATG)	 GG	7870-7896	GT	AGG
(GAG)	 AG	8025-8118	GT	GGG
-recovered GlimmerHMM_glimmerT_61630-T1, initial, 7870, 7896
-recovered GlimmerHMM_glimmerT_61630-T1, internal, 8025, 8118
Valid prediction for GlimmerHMM_glimmerT_61629-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61629-T1 6078-6301-terminal-1 is invalid.
Couldn't classify 7781, 7896
Sorry, prediction GeneMark_model.107178_t fails validation.
(ATG)	 AC	7252-7269	GT	AGG
(ACA)	 AG	7295-7392	GT	AGG
(AGA)	 AG	7417-7443	GT	GGG
(GAG)	 AG	7466-7633	GT	GAG
(GGC)	 AG	7655-7692	GT	AGG
(ACA)	 AG	7713-7719	GT	GAG
(AGC)	 AG	7744-7758	GT	AGG
(AGA)	 AG	7781-7896	GT	AGG
-recovered GeneMark_model.107178_t, initial, 7252, 7269
-recovered GeneMark_model.107178_t, internal, 7295, 7392
-recovered GeneMark_model.107178_t, internal, 7417, 7443
-recovered GeneMark_model.107178_t, internal, 7466, 7633
-recovered GeneMark_model.107178_t, internal, 7655, 7692
-recovered GeneMark_model.107178_t, internal, 7713, 7719
-recovered GeneMark_model.107178_t, internal, 7744, 7758
-recovered GeneMark_model.107178_t, internal, 7781, 7896
Valid prediction for Augustus_model.g40976.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107177_t
Couldn't classify 760, 810
Sorry, prediction snap_scaffold_282-snap.3-T1 fails validation.
(AAC)	 AG	760-810	GT	CGG
(CTC)	 AG	1974-2164	GG	GAG
-recovered snap_scaffold_282-snap.3-T1, terminal, 1974, 2164
-recovered snap_scaffold_282-snap.3-T1, internal, 760, 810
Valid prediction for GeneMark_model.107175_t
Valid prediction for snap_scaffold_282-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5497, rend_intergenic: 4484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8600
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5497, rend_intergenic: 4484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support