-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2819

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 154, 387
Sorry, prediction snap_scaffold_2819-snap.1-T1 fails validation.
(CCC)	 AG	154-387	GT	GGG
(CAG)	 AG	740-1000	CG	GAC
-recovered snap_scaffold_2819-snap.1-T1, terminal, 740, 1000
-recovered snap_scaffold_2819-snap.1-T1, internal, 154, 387
Valid prediction for GlimmerHMM_glimmerT_63223-T1
Couldn't classify 547, 567
Sorry, prediction GeneMark_model.110622_t fails validation.
(ATG)	 AG	241-260	GT	AAG
(GGG)	 AG	300-431	GT	GGG
(AGA)	 AG	453-461	GT	GGG
(GGG)	 AG	490-501	GT	GGG
(TGG)	 AG	547-567	GT	GGG
-recovered GeneMark_model.110622_t, initial, 241, 260
-recovered GeneMark_model.110622_t, internal, 241, 260
-recovered GeneMark_model.110622_t, internal, 300, 431
-recovered GeneMark_model.110622_t, internal, 453, 461
-recovered GeneMark_model.110622_t, internal, 490, 501
-recovered GeneMark_model.110622_t, internal, 547, 567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110621_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1117
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support