-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2818

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110620_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 85, 210
Sorry, prediction GlimmerHMM_glimmerT_63222-T1 fails validation.
(GCA)	 AG	85-210	GT	AGG
(ACG)	 AG	450-614	GT	AGG
(CCC)	 AG	908-1086	GG	AGG
-recovered GlimmerHMM_glimmerT_63222-T1, terminal, 908, 1086
-recovered GlimmerHMM_glimmerT_63222-T1, internal, 85, 210
-recovered GlimmerHMM_glimmerT_63222-T1, internal, 450, 614
Couldn't classify 85, 210
Couldn't classify 908, 1048
Sorry, prediction snap_scaffold_2818-snap.1-T1 fails validation.
(GCA)	 AG	85-210	GT	AGG
(ACG)	 AG	450-614	GT	AGG
(CCC)	 AG	908-1048	GT	CGG
-recovered snap_scaffold_2818-snap.1-T1, internal, 85, 210
-recovered snap_scaffold_2818-snap.1-T1, internal, 450, 614
-recovered snap_scaffold_2818-snap.1-T1, internal, 908, 1048
Couldn't classify 908, 1048
Sorry, prediction Augustus_model.g42189.t1 fails validation.
(ATG)	 AG	108-210	GT	AGG
(ACG)	 AG	450-614	GT	AGG
(CCC)	 AG	908-1048	GT	CGG
-recovered Augustus_model.g42189.t1, initial, 108, 210
-recovered Augustus_model.g42189.t1, internal, 108, 210
-recovered Augustus_model.g42189.t1, internal, 450, 614
-recovered Augustus_model.g42189.t1, internal, 908, 1048
Couldn't classify 908, 1082
Sorry, prediction GeneMark_model.110619_t fails validation.
(ATG)	 AG	730-748	GT	TGG
(CCC)	 AG	908-1082	GT	GGG
-recovered GeneMark_model.110619_t, initial, 730, 748
-recovered GeneMark_model.110619_t, internal, 730, 748
-recovered GeneMark_model.110619_t, internal, 908, 1082

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1117
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support