-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2816

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63221-T1
Couldn't classify 218, 506
Sorry, prediction snap_scaffold_2816-snap.1-T1 fails validation.
(GAA)	 AG	218-506	GT	TGG
-recovered snap_scaffold_2816-snap.1-T1, internal, 218, 506
Couldn't classify 40, 58
Sorry, prediction GeneMark_model.110618_t fails validation.
(AGC)	 AG	40-58	GT	GAG
(CAG)	 AG	160-314	GT	AAG
(AGC)	 AG	336-530	GT	GGG
(ATG)	 AG	675-740	GT	AGG
(AGA)	 AG	768-828	GA	GAG
add_exon() Sorry, GeneMark_model.110618_t 675-740-initial-1 is invalid.
-recovered GeneMark_model.110618_t, initial, 675, 740
-recovered GeneMark_model.110618_t, terminal, 768, 828
-recovered GeneMark_model.110618_t, internal, 40, 58
-recovered GeneMark_model.110618_t, internal, 160, 314
-recovered GeneMark_model.110618_t, internal, 336, 530
-recovered GeneMark_model.110618_t, internal, 675, 740

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1117
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support