-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2815

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 16, 282
Sorry, prediction GlimmerHMM_glimmerT_63220-T1 fails validation.
(GAG)	 AG	16-282	GT	GGG
(TTT)	 AG	686-802	AA	GAA
-recovered GlimmerHMM_glimmerT_63220-T1, terminal, 686, 802
-recovered GlimmerHMM_glimmerT_63220-T1, internal, 16, 282
Couldn't classify 16, 282
Couldn't classify 686, 762
Sorry, prediction GeneMark_model.110617_t fails validation.
(GAG)	 AG	16-282	GT	GGG
(TTT)	 AG	686-762	GT	TTG
-recovered GeneMark_model.110617_t, internal, 16, 282
-recovered GeneMark_model.110617_t, internal, 686, 762
Couldn't classify 1, 282
Couldn't classify 686, 784
Sorry, prediction Augustus_model.g42188.t1 fails validation.
(CCC)	 CT	1-282	GT	GGG
(TTT)	 AG	686-784	GT	AGG
-recovered Augustus_model.g42188.t1, internal, 686, 784
Couldn't classify 49, 282
Couldn't classify 686, 784
Sorry, prediction pasa_asmbl_38575.p1 fails validation.
(AGC)	 AC	49-282	GT	GGG
(TTT)	 AG	686-784	GT	AGG
-recovered pasa_asmbl_38575.p1, internal, 686, 784
Couldn't classify 16, 282
Couldn't classify 686, 784
Sorry, prediction snap_scaffold_2815-snap.1-T1 fails validation.
(GAG)	 AG	16-282	GT	GGG
(TTT)	 AG	686-784	GT	AGG
-recovered snap_scaffold_2815-snap.1-T1, internal, 16, 282
-recovered snap_scaffold_2815-snap.1-T1, internal, 686, 784

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1117
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support