-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2813

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51, 145
Sorry, prediction GeneMark_model.110615_t fails validation.
(ACA)	 AG	51-145	GT	TGG
(GAA)	 AG	290-313	GT	ATG
(GAA)	 AG	435-443	GT	GTG
(GGA)	 AG	465-600	GA	AAG
-recovered GeneMark_model.110615_t, terminal, 465, 600
-recovered GeneMark_model.110615_t, internal, 51, 145
-recovered GeneMark_model.110615_t, internal, 290, 313
-recovered GeneMark_model.110615_t, internal, 435, 443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 106, 175
Couldn't classify 1002, 1055
Sorry, prediction Augustus_model.g42187.t1 fails validation.
(ACC)	 AG	106-175	GT	AGG
(ATG)	 AG	418-473	GT	AGG
(GTT)	 AG	864-902	GT	CAG
(GAG)	 AG	1002-1055	GT	CTG
add_exon() Sorry, Augustus_model.g42187.t1 418-473-initial-1 is invalid.
-recovered Augustus_model.g42187.t1, initial, 418, 473
-recovered Augustus_model.g42187.t1, internal, 106, 175
-recovered Augustus_model.g42187.t1, internal, 418, 473
-recovered Augustus_model.g42187.t1, internal, 864, 902
-recovered Augustus_model.g42187.t1, internal, 1002, 1055
Couldn't classify 73, 175
Couldn't classify 1002, 1055
Sorry, prediction snap_scaffold_2813-snap.1-T1 fails validation.
(GTG)	 AG	73-175	GT	AGG
(ATG)	 AG	418-473	GT	AGG
(GAG)	 AG	1002-1055	GT	CTG
add_exon() Sorry, snap_scaffold_2813-snap.1-T1 418-473-initial-1 is invalid.
-recovered snap_scaffold_2813-snap.1-T1, initial, 418, 473
-recovered snap_scaffold_2813-snap.1-T1, internal, 73, 175
-recovered snap_scaffold_2813-snap.1-T1, internal, 418, 473
-recovered snap_scaffold_2813-snap.1-T1, internal, 1002, 1055

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1117
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support