-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2810

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 63, 123
Couldn't classify 942, 1067
Sorry, prediction GeneMark_model.110613_t fails validation.
(GTC)	 AG	63-123	GT	AGG
(GCG)	 AG	156-287	GT	AGG
(GCT)	 AG	942-1067	GT	AGG
-recovered GeneMark_model.110613_t, internal, 63, 123
-recovered GeneMark_model.110613_t, internal, 156, 287
-recovered GeneMark_model.110613_t, internal, 942, 1067
Couldn't classify 124, 287
Couldn't classify 942, 1067
Sorry, prediction Augustus_model.g42186.t1 fails validation.
(GTC)	 AG	124-287	GT	AGG
(GCT)	 AG	942-1067	GT	AGG
-recovered Augustus_model.g42186.t1, internal, 124, 287
-recovered Augustus_model.g42186.t1, internal, 942, 1067
Couldn't classify 124, 707
Couldn't classify 942, 1067
Sorry, prediction snap_scaffold_2810-snap.1-T1 fails validation.
(GTC)	 AG	124-707	GT	AGG
(GCT)	 AG	942-1067	GT	AGG
-recovered snap_scaffold_2810-snap.1-T1, internal, 124, 707
-recovered snap_scaffold_2810-snap.1-T1, internal, 942, 1067

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1118
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support