-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2807

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 73, 158
Couldn't classify 1061, 1104
Sorry, prediction GeneMark_model.110611_t fails validation.
(GGT)	 AG	73-158	GT	CCG
(AAG)	 AG	259-339	GT	GGG
(AGA)	 AG	366-533	GT	AGG
(GAT)	 AG	770-880	GT	CCG
(CGA)	 AG	926-1012	GT	ATG
(GAG)	 AG	1061-1104	GT	GGG
-recovered GeneMark_model.110611_t, internal, 73, 158
-recovered GeneMark_model.110611_t, internal, 259, 339
-recovered GeneMark_model.110611_t, internal, 366, 533
-recovered GeneMark_model.110611_t, internal, 770, 880
-recovered GeneMark_model.110611_t, internal, 926, 1012
-recovered GeneMark_model.110611_t, internal, 1061, 1104

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 80, 356
Couldn't classify 899, 1094
Sorry, prediction snap_scaffold_2807-snap.1-T1 fails validation.
(ATC)	 AG	80-356	GT	CGG
(GAG)	 AG	899-1094	GT	AGG
-recovered snap_scaffold_2807-snap.1-T1, internal, 80, 356
-recovered snap_scaffold_2807-snap.1-T1, internal, 899, 1094
Couldn't classify 80, 356
Couldn't classify 899, 1094
Sorry, prediction Augustus_model.g42185.t1 fails validation.
(ATC)	 AG	80-356	GT	CGG
(GAG)	 AG	899-1094	GT	AGG
-recovered Augustus_model.g42185.t1, internal, 80, 356
-recovered Augustus_model.g42185.t1, internal, 899, 1094
Couldn't classify 80, 356
Sorry, prediction GlimmerHMM_glimmerT_63217-T1 fails validation.
(ATC)	 AG	80-356	GT	CGG
(GAG)	 AG	899-1105	GG	GAG
-recovered GlimmerHMM_glimmerT_63217-T1, terminal, 899, 1105
-recovered GlimmerHMM_glimmerT_63217-T1, internal, 80, 356

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1119
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support