-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2806

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 50
Couldn't classify 945, 1067
Sorry, prediction GeneMark_model.110610_t fails validation.
(CCG)	 AG	43-50	GT	GTG
(AGA)	 AG	707-718	GT	AAG
(AGA)	 AG	741-749	GT	GGG
(GGA)	 AG	773-784	GT	ACG
(AGG)	 AG	807-815	GC	GAG
(AGC)	 AG	837-884	GT	AGG
(GGA)	 AG	919-924	GT	AGG
(AGT)	 AG	945-1067	GT	GAG
-recovered GeneMark_model.110610_t, internal, 43, 50
-recovered GeneMark_model.110610_t, internal, 707, 718
-recovered GeneMark_model.110610_t, internal, 741, 749
-recovered GeneMark_model.110610_t, internal, 773, 784
-recovered GeneMark_model.110610_t, internal, 807, 815
-recovered GeneMark_model.110610_t, internal, 837, 884
-recovered GeneMark_model.110610_t, internal, 919, 924
-recovered GeneMark_model.110610_t, internal, 945, 1067

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1119
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support