-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2804

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 45
Sorry, prediction GeneMark_model.110608_t fails validation.
(GGT)	 AG	40-45	GT	GAG
(ACA)	 AG	70-84	GT	GAG
(GAG)	 AG	611-655	GT	AAG
(AGA)	 AG	850-871	GT	GGG
(TTC)	 AG	968-1009	AC	AGA
-recovered GeneMark_model.110608_t, terminal, 968, 1009
-recovered GeneMark_model.110608_t, internal, 40, 45
-recovered GeneMark_model.110608_t, internal, 70, 84
-recovered GeneMark_model.110608_t, internal, 611, 655
-recovered GeneMark_model.110608_t, internal, 850, 871

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 546, 604
Sorry, prediction Augustus_model.g42184.t1 fails validation.
(ATG)	 GT	424-427	GT	GGG
(ACA)	 AG	546-604	GT	AGG
-recovered Augustus_model.g42184.t1, initial, 424, 427
-recovered Augustus_model.g42184.t1, internal, 546, 604

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1120
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support