-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2800

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 61
Sorry, prediction GeneMark_model.110605_t fails validation.
(AGA)	 AG	38-61	GT	AAG
(AGC)	 AG	318-371	GT	AGG
(ACA)	 AG	414-503	GT	CTG
(GGA)	 AG	642-666	GT	AAG
-recovered GeneMark_model.110605_t, terminal, 642, 666
-recovered GeneMark_model.110605_t, internal, 38, 61
-recovered GeneMark_model.110605_t, internal, 318, 371
-recovered GeneMark_model.110605_t, internal, 414, 503
-recovered GeneMark_model.110605_t, internal, 642, 666
Couldn't classify 1037, 1056
Sorry, prediction snap_scaffold_2800-snap.1-T1 fails validation.
(ATG)	 AG	26-61	GT	AAG
(ATT)	 AG	196-371	GT	AGG
(ATC)	 AG	1037-1056	GT	GAG
-recovered snap_scaffold_2800-snap.1-T1, initial, 26, 61
-recovered snap_scaffold_2800-snap.1-T1, internal, 26, 61
-recovered snap_scaffold_2800-snap.1-T1, internal, 196, 371
-recovered snap_scaffold_2800-snap.1-T1, internal, 1037, 1056

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110606_t
add_exon() Sorry, GeneMark_model.110606_t 33-180-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1121
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support