-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_280

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61626-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61626-T1 2214-2367-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_280-snap.2-T1
Valid prediction for GeneMark_model.107168_t
Valid prediction for Augustus_model.g40975.t1
Valid prediction for GeneMark_model.107167_t
Valid prediction for GlimmerHMM_glimmerT_61628-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61628-T1 4723-5003-terminal-1 is invalid.
Valid prediction for snap_scaffold_280-snap.3-T1
Valid prediction for GeneMark_model.107169_t
Valid prediction for GlimmerHMM_glimmerT_61627-T1
Valid prediction for snap_scaffold_280-snap.1-T1
Valid prediction for Augustus_model.g40974.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8643
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support