-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_9365741-9553292

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_28-snap.2144-T1
Valid prediction for GlimmerHMM_glimmerT_60839-T1
Valid prediction for snap_scaffold_28-snap.2147-T1
Valid prediction for GeneMark_model.106027_t
Valid prediction for snap_scaffold_28-snap.2118-T1
Valid prediction for snap_scaffold_28-snap.2128-T1
Valid prediction for snap_scaffold_28-snap.2132-T1
Valid prediction for Augustus_model.g40482.t1
Valid prediction for snap_scaffold_28-snap.2141-T1
Couldn't classify 135824, 135845
Couldn't classify 137619, 137664
Sorry, prediction pasa_asmbl_38483.p1 fails validation.
(CAG)	 AA	135824-135845	GT	AGG
(TTC)	 AG	136680-136802	GT	TGG
(GGA)	 AG	137000-137117	GT	ATG
(GTG)	 AG	137213-137371	GT	CGG
(GTG)	 AG	137619-137664	GC	ATG
-recovered pasa_asmbl_38483.p1, internal, 136680, 136802
-recovered pasa_asmbl_38483.p1, internal, 137000, 137117
-recovered pasa_asmbl_38483.p1, internal, 137213, 137371
-recovered pasa_asmbl_38483.p1, internal, 137619, 137664
Couldn't classify 132078, 132150
Couldn't classify 134216, 134307
Sorry, prediction pasa_asmbl_38482.p1 fails validation.
(GGT)	 CC	132078-132150	GT	AGG
(GTG)	 AG	133803-133895	GT	AGG
(GAG)	 AG	133978-134103	GT	GGG
(GTG)	 AG	134216-134307	GC	CGG
-recovered pasa_asmbl_38482.p1, internal, 133803, 133895
-recovered pasa_asmbl_38482.p1, internal, 133978, 134103
-recovered pasa_asmbl_38482.p1, internal, 134216, 134307
Valid prediction for GlimmerHMM_glimmerT_60825-T1
Valid prediction for GlimmerHMM_glimmerT_60829-T1
Valid prediction for snap_scaffold_28-snap.2130-T1
Valid prediction for GeneMark_model.106011_t
Valid prediction for Augustus_model.g40493.t1
Valid prediction for GeneMark_model.106005_t
Valid prediction for snap_scaffold_28-snap.2121-T1
Valid prediction for Augustus_model.g40491.t1
Valid prediction for GlimmerHMM_glimmerT_60836-T1
Valid prediction for HiQ_model.g40488.t1
Valid prediction for GeneMark_model.106019_t
Valid prediction for GeneMark_model.106012_t
Valid prediction for GeneMark_model.106017_t
Valid prediction for Augustus_model.g40480.t1
Valid prediction for GlimmerHMM_glimmerT_60824-T1
Valid prediction for GeneMark_model.105998_t
Valid prediction for GeneMark_model.106014_t
Valid prediction for GeneMark_model.106002_t
Valid prediction for snap_scaffold_28-snap.2148-T1
Couldn't classify 48316, 48630
Sorry, prediction pasa_asmbl_38477.p1 fails validation.
(CTC)	 CT	48316-48630	CT	GAC
Couldn't classify 88004, 88105
Couldn't classify 88504, 88684
Sorry, prediction pasa_asmbl_38479.p1 fails validation.
(ATG)	 GG	83115-83130	GT	AGG
(GTG)	 AG	84922-85089	GT	CGG
(ACC)	 AG	85430-85569	GT	TGG
(ATA)	 AG	88004-88105	AT	TGA
(GAT)	 AC	88504-88684	GT	AGG
(AGC)	 AG	89494-89782	GT	AGG
(GCT)	 AG	90010-90316	TG	GAT
-recovered pasa_asmbl_38479.p1, initial, 83115, 83130
-recovered pasa_asmbl_38479.p1, terminal, 90010, 90316
-recovered pasa_asmbl_38479.p1, internal, 84922, 85089
-recovered pasa_asmbl_38479.p1, internal, 85430, 85569
-recovered pasa_asmbl_38479.p1, internal, 89494, 89782
Valid prediction for GlimmerHMM_glimmerT_60845-T1
Valid prediction for GlimmerHMM_glimmerT_60832-T1
Valid prediction for GeneMark_model.105994_t
Valid prediction for GeneMark_model.106016_t
Valid prediction for GlimmerHMM_glimmerT_60827-T1
Valid prediction for snap_scaffold_28-snap.2122-T1
Valid prediction for snap_scaffold_28-snap.2115-T1
Couldn't classify 48096, 48263
Sorry, prediction pasa_asmbl_38476.p1 fails validation.
(ATG)	 GC	43451-43907	GT	CGG
(GAG)	 AG	44164-44251	GT	AGG
(GGA)	 AG	44337-44387	GT	AGG
(GTT)	 AG	44494-44584	GT	CTG
(GGT)	 AG	44734-44868	GT	AGG
(ACC)	 AG	45297-45402	GT	CAG
(TAA)	 AG	45755-45828	GT	CTG
(CTG)	 AG	46584-46744	GT	GGG
(GTT)	 AG	46904-47037	GT	AAG
(CCG)	 AG	47192-47372	GT	GGG
(GGT)	 AG	47620-47759	GT	GAG
(ATA)	 AG	47897-47934	GT	AGG
(CAT)	 AG	48096-48263	GG	GGG
-recovered pasa_asmbl_38476.p1, initial, 43451, 43907
-recovered pasa_asmbl_38476.p1, internal, 44164, 44251
-recovered pasa_asmbl_38476.p1, internal, 44337, 44387
-recovered pasa_asmbl_38476.p1, internal, 44494, 44584
-recovered pasa_asmbl_38476.p1, internal, 44734, 44868
-recovered pasa_asmbl_38476.p1, internal, 45297, 45402
-recovered pasa_asmbl_38476.p1, internal, 45755, 45828
-recovered pasa_asmbl_38476.p1, internal, 46584, 46744
-recovered pasa_asmbl_38476.p1, internal, 46904, 47037
-recovered pasa_asmbl_38476.p1, internal, 47192, 47372
-recovered pasa_asmbl_38476.p1, internal, 47620, 47759
-recovered pasa_asmbl_38476.p1, internal, 47897, 47934
Valid prediction for GeneMark_model.106000_t
Valid prediction for snap_scaffold_28-snap.2142-T1
Valid prediction for GeneMark_model.106007_t
Valid prediction for snap_scaffold_28-snap.2110-T1
Valid prediction for GlimmerHMM_glimmerT_60837-T1
Valid prediction for snap_scaffold_28-snap.2125-T1
Valid prediction for snap_scaffold_28-snap.2124-T1
Valid prediction for snap_scaffold_28-snap.2136-T1
Valid prediction for snap_scaffold_28-snap.2134-T1
Valid prediction for HiQ_model.g40492.t1
Valid prediction for HiQ_model.g40489.t1
Valid prediction for GlimmerHMM_glimmerT_60828-T1
Valid prediction for snap_scaffold_28-snap.2129-T1
Valid prediction for HiQ_model.g40483.t1
Couldn't classify 88004, 88105
Couldn't classify 88504, 88684
Sorry, prediction CodingQuarry_transcript_43660-T1 fails validation.
(ATG)	 GG	83115-83130	GT	AGG
(GTG)	 AG	84922-85089	GT	CGG
(ACC)	 AG	85430-85569	GT	TGG
(ATA)	 AG	88004-88105	AT	TGA
(GAT)	 AC	88504-88684	GT	AGG
(AGC)	 AG	89494-89782	GT	AGG
(GCT)	 AG	90010-90316	TG	GAT
-recovered CodingQuarry_transcript_43660-T1, initial, 83115, 83130
-recovered CodingQuarry_transcript_43660-T1, terminal, 90010, 90316
-recovered CodingQuarry_transcript_43660-T1, internal, 84922, 85089
-recovered CodingQuarry_transcript_43660-T1, internal, 85430, 85569
-recovered CodingQuarry_transcript_43660-T1, internal, 89494, 89782
Valid prediction for GlimmerHMM_glimmerT_60841-T1
Valid prediction for GeneMark_model.106021_t
Valid prediction for snap_scaffold_28-snap.2104-T1
Valid prediction for GlimmerHMM_glimmerT_60840-T1
Valid prediction for snap_scaffold_28-snap.2107-T1
Valid prediction for GeneMark_model.105996_t
Valid prediction for GeneMark_model.106023_t
Valid prediction for GeneMark_model.106009_t
Valid prediction for GlimmerHMM_glimmerT_60835-T1
Valid prediction for snap_scaffold_28-snap.2138-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60833-T1
Valid prediction for GeneMark_model.106024_t
Valid prediction for snap_scaffold_28-snap.2145-T1
Valid prediction for snap_scaffold_28-snap.2140-T1
Valid prediction for GeneMark_model.105993_t
Valid prediction for GeneMark_model.105995_t
Couldn't classify 87991, 88075
Sorry, prediction pasa_asmbl_37847.p1 fails validation.
(ATG)	 AG	80217-80505	GT	GGG
(GTT)	 AG	80687-80827	GT	TGG
(TTG)	 AG	81273-81358	GT	AGG
(GAG)	 AG	81642-81738	GT	ATG
(TGC)	 AG	82650-82769	GT	AAG
(GTC)	 AG	83279-83500	GT	TGG
(GTC)	 AG	84006-84639	GT	AGG
(TAA)	 AG	85268-85453	GT	AGG
(TGG)	 AG	87991-88075	GT	AGG
-recovered pasa_asmbl_37847.p1, initial, 80217, 80505
-recovered pasa_asmbl_37847.p1, internal, 80217, 80505
-recovered pasa_asmbl_37847.p1, internal, 80687, 80827
-recovered pasa_asmbl_37847.p1, internal, 81273, 81358
-recovered pasa_asmbl_37847.p1, internal, 81642, 81738
-recovered pasa_asmbl_37847.p1, internal, 82650, 82769
-recovered pasa_asmbl_37847.p1, internal, 83279, 83500
-recovered pasa_asmbl_37847.p1, internal, 84006, 84639
-recovered pasa_asmbl_37847.p1, internal, 85268, 85453
-recovered pasa_asmbl_37847.p1, internal, 87991, 88075
Valid prediction for snap_scaffold_28-snap.2127-T1
Valid prediction for GeneMark_model.106022_t
Valid prediction for snap_scaffold_28-snap.2111-T1
Valid prediction for snap_scaffold_28-snap.2146-T1
Valid prediction for GlimmerHMM_glimmerT_60831-T1
Valid prediction for Augustus_model.g40496.t1
Valid prediction for GlimmerHMM_glimmerT_60842-T1
Valid prediction for snap_scaffold_28-snap.2126-T1
Valid prediction for snap_scaffold_28-snap.2108-T1
Valid prediction for Augustus_model.g40495.t1
Valid prediction for snap_scaffold_28-snap.2109-T1
Valid prediction for GeneMark_model.106010_t
Valid prediction for GeneMark_model.106008_t
Valid prediction for GlimmerHMM_glimmerT_60838-T1
Valid prediction for GeneMark_model.105997_t
Valid prediction for snap_scaffold_28-snap.2105-T1
Valid prediction for GeneMark_model.105999_t
Valid prediction for snap_scaffold_28-snap.2113-T1
Couldn't classify 135944, 136156
Sorry, prediction pasa_asmbl_37838.p1 fails validation.
(ATG)	 TC	129742-129744	GT	TGG
(GTG)	 AG	130684-130898	GT	ACG
(AGC)	 AG	131919-132100	GT	AGG
(GCG)	 AG	132797-133008	GT	TGG
(ATC)	 AG	133267-133451	GT	AAG
(ATA)	 AG	133693-133798	GT	AGG
(GTT)	 AG	133995-134108	GT	AGG
(GCA)	 AG	134454-134592	GT	GGG
(GCG)	 AG	134791-134986	GT	AGG
(GAC)	 AG	135240-135498	GT	AGG
(TGC)	 AG	135714-135821	GT	AGG
(AAA)	 AG	135944-136156	GA	AAG
-recovered pasa_asmbl_37838.p1, initial, 129742, 129744
-recovered pasa_asmbl_37838.p1, internal, 130684, 130898
-recovered pasa_asmbl_37838.p1, internal, 131919, 132100
-recovered pasa_asmbl_37838.p1, internal, 132797, 133008
-recovered pasa_asmbl_37838.p1, internal, 133267, 133451
-recovered pasa_asmbl_37838.p1, internal, 133693, 133798
-recovered pasa_asmbl_37838.p1, internal, 133995, 134108
-recovered pasa_asmbl_37838.p1, internal, 134454, 134592
-recovered pasa_asmbl_37838.p1, internal, 134791, 134986
-recovered pasa_asmbl_37838.p1, internal, 135240, 135498
-recovered pasa_asmbl_37838.p1, internal, 135714, 135821
Valid prediction for snap_scaffold_28-snap.2114-T1
Valid prediction for Augustus_model.g40490.t1
Valid prediction for Augustus_model.g40494.t1
Valid prediction for snap_scaffold_28-snap.2135-T1
Valid prediction for Augustus_model.g40487.t1
Valid prediction for snap_scaffold_28-snap.2120-T1
Valid prediction for GeneMark_model.106004_t
Valid prediction for pasa_asmbl_37837.p1
Valid prediction for snap_scaffold_28-snap.2117-T1
Valid prediction for GeneMark_model.106013_t
Valid prediction for GeneMark_model.106003_t
Valid prediction for snap_scaffold_28-snap.2131-T1
Valid prediction for GeneMark_model.106006_t
Valid prediction for snap_scaffold_28-snap.2143-T1
Valid prediction for snap_scaffold_28-snap.2137-T1
Valid prediction for snap_scaffold_28-snap.2139-T1
Valid prediction for GeneMark_model.106020_t
Valid prediction for snap_scaffold_28-snap.2112-T1
Valid prediction for GeneMark_model.106001_t
Valid prediction for GeneMark_model.106018_t
Valid prediction for CodingQuarry_transcript_43659-T1
Valid prediction for GeneMark_model.106015_t
Valid prediction for pasa_asmbl_37843.p1
Valid prediction for snap_scaffold_28-snap.2116-T1
Couldn't classify 91268, 91582
Sorry, prediction pasa_asmbl_37846.p2 fails validation.
(TTG)	 GT	91268-91582	GA	GAG
Valid prediction for GlimmerHMM_glimmerT_60826-T1
Valid prediction for snap_scaffold_28-snap.2133-T1
Valid prediction for GlimmerHMM_glimmerT_60830-T1
Valid prediction for GeneMark_model.106026_t
Valid prediction for GlimmerHMM_glimmerT_60834-T1
Valid prediction for snap_scaffold_28-snap.2106-T1
Valid prediction for snap_scaffold_28-snap.2119-T1
Valid prediction for snap_scaffold_28-snap.2123-T1
Valid prediction for Augustus_model.g40484.t1
Valid prediction for CodingQuarry_transcript_43658-T1
Valid prediction for Augustus_model.g40485.t1
Valid prediction for HiQ_model.g40486.t1
Valid prediction for Augustus_model.g40481.t1
Valid prediction for GlimmerHMM_glimmerT_60846-T1
Valid prediction for GlimmerHMM_glimmerT_60843-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.106025_t
Valid prediction for GlimmerHMM_glimmerT_60844-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5849, rend_intergenic: 4457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48326, rend_intergenic: 45279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53543, rend_intergenic: 52963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56852, rend_intergenic: 54098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69207, rend_intergenic: 61063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88168, rend_intergenic: 86798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89275, rend_intergenic: 88537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97153, rend_intergenic: 95971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116530, rend_intergenic: 99083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121682, rend_intergenic: 121572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133404, rend_intergenic: 129397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135877, rend_intergenic: 133825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145483, rend_intergenic: 138197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149644, rend_intergenic: 148468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161058, rend_intergenic: 157040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162176, rend_intergenic: 161598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164330, rend_intergenic: 162205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168272, rend_intergenic: 164410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184957, rend_intergenic: 176630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187552
-exon list size: 582


building trellis

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58.0    
58.2    
58.4    
58.6    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.2    
62.3    
62.5    
62.7    
62.8    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.8    
65.9    
66.1    
66.3    
66.4    
66.6    
66.8    
67.0    
67.1    
67.3    
67.5    
67.6    
67.8    
68.0    
68.2    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.3    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
72.9    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.7    
74.8    
75.0    
75.2    
75.3    
75.5    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.7    
77.9    
78.1    
78.3    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.7    
81.8    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.6    
83.7    
83.9    
84.1    
84.2    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
92.0    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.4    
97.6    
97.8    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 5849, rend_intergenic: 4457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48326, rend_intergenic: 45279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53543, rend_intergenic: 52963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56852, rend_intergenic: 54098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69207, rend_intergenic: 61063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88168, rend_intergenic: 86798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89275, rend_intergenic: 88537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97153, rend_intergenic: 95971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116530, rend_intergenic: 99083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121682, rend_intergenic: 121572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133404, rend_intergenic: 129397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135877, rend_intergenic: 133825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145483, rend_intergenic: 138197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149644, rend_intergenic: 148468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161058, rend_intergenic: 157040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162176, rend_intergenic: 161598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164330, rend_intergenic: 162205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168272, rend_intergenic: 164410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184957, rend_intergenic: 176630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support