-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_8332561-8582086

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40422.t1
Valid prediction for snap_scaffold_28-snap.1931-T1
Couldn't classify 224002, 224098
Couldn't classify 225734, 225741
Sorry, prediction pasa_asmbl_38451.p1 fails validation.
(GAA)	 CG	224002-224098	GT	AAG
(GGA)	 AG	225026-225625	GT	CGG
(GCG)	 AG	225734-225741	AC	CGA
-recovered pasa_asmbl_38451.p1, internal, 225026, 225625
Valid prediction for CodingQuarry_transcript_43645-T1
Valid prediction for Augustus_model.g40432.t1
Valid prediction for GeneMark_model.105761_t
Valid prediction for GeneMark_model.105747_t
Valid prediction for GlimmerHMM_glimmerT_60726-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.105782_t
Valid prediction for GeneMark_model.105780_t
Valid prediction for GeneMark_model.105764_t
Valid prediction for GlimmerHMM_glimmerT_60710-T1
Valid prediction for GeneMark_model.105772_t
Valid prediction for GeneMark_model.105804_t
Valid prediction for Augustus_model.g40435.t1
Valid prediction for HiQ_model.g40428.t1
Valid prediction for snap_scaffold_28-snap.1921-T1
Valid prediction for Augustus_model.g40433.t1
Valid prediction for Augustus_model.g40434.t1
Valid prediction for CodingQuarry_transcript_43646-T1
Valid prediction for snap_scaffold_28-snap.1914-T1
Valid prediction for snap_scaffold_28-snap.1918-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_38454.p1
Valid prediction for GlimmerHMM_glimmerT_60733-T1
Valid prediction for GeneMark_model.105784_t
Valid prediction for GeneMark_model.105765_t
Valid prediction for snap_scaffold_28-snap.1923-T1
Valid prediction for GlimmerHMM_glimmerT_60732-T1
Valid prediction for GeneMark_model.105763_t
Valid prediction for snap_scaffold_28-snap.1901-T1
Valid prediction for Augustus_model.g40417.t1
Valid prediction for GeneMark_model.105762_t
Valid prediction for GlimmerHMM_glimmerT_60731-T1
Valid prediction for snap_scaffold_28-snap.1908-T1
Valid prediction for GeneMark_model.105775_t
Couldn't classify 99159, 99296
Sorry, prediction pasa_asmbl_38446.p1 fails validation.
(CCG)	 GT	99159-99296	GT	AGG
(GAG)	 AG	99538-99602	GT	AGG
(GAG)	 AG	99783-99966	CC	AGC
-recovered pasa_asmbl_38446.p1, terminal, 99783, 99966
-recovered pasa_asmbl_38446.p1, internal, 99538, 99602
Valid prediction for GeneMark_model.105743_t
Valid prediction for snap_scaffold_28-snap.1905-T1
Valid prediction for Augustus_model.g40420.t1
Valid prediction for GeneMark_model.105795_t
Valid prediction for Augustus_model.g40424.t1
Valid prediction for GeneMark_model.105770_t
Valid prediction for GlimmerHMM_glimmerT_60720-T1
Valid prediction for snap_scaffold_28-snap.1915-T1
Valid prediction for snap_scaffold_28-snap.1896-T1
Valid prediction for snap_scaffold_28-snap.1898-T1
Valid prediction for GeneMark_model.105741_t
Valid prediction for GeneMark_model.105790_t
Couldn't classify 146478, 146543
Couldn't classify 149904, 150011
Sorry, prediction pasa_asmbl_38448.p1 fails validation.
(TCG)	 AG	146478-146543	GT	AGG
(GTG)	 AG	147510-149096	GT	AGG
(GTT)	 AG	149118-149804	GT	CTG
(CAA)	 AG	149904-150011	CG	TCC
-recovered pasa_asmbl_38448.p1, internal, 146478, 146543
-recovered pasa_asmbl_38448.p1, internal, 147510, 149096
-recovered pasa_asmbl_38448.p1, internal, 149118, 149804
Valid prediction for GeneMark_model.105753_t
Valid prediction for GeneMark_model.105736_t
Valid prediction for GeneMark_model.105751_t
Valid prediction for CodingQuarry_transcript_43647-T1
Valid prediction for snap_scaffold_28-snap.1933-T1
Valid prediction for snap_scaffold_28-snap.1940-T1
Valid prediction for GeneMark_model.105739_t
Valid prediction for snap_scaffold_28-snap.1911-T1
Valid prediction for snap_scaffold_28-snap.1943-T1
Valid prediction for GeneMark_model.105756_t
Valid prediction for GeneMark_model.105799_t
Valid prediction for Augustus_model.g40427.t1
Valid prediction for GeneMark_model.105732_t
Couldn't classify 225868, 226296
Sorry, prediction pasa_asmbl_38452.p1 fails validation.
(ACG)	 GC	225868-226296	AT	AGA
Couldn't classify 98279, 98285
Sorry, prediction pasa_asmbl_38445.p1 fails validation.
(ATG)	 AG	94074-94172	GT	AGG
(AAT)	 AG	94672-94807	GT	AGG
(TGC)	 AG	95163-95287	GT	AGG
(TCT)	 AG	95678-95723	GT	GAG
(TTC)	 AG	95907-96050	GT	TGG
(ACA)	 AG	96687-96876	GC	AGG
(GAA)	 AG	96982-97048	GT	AGG
(GTC)	 AG	97153-97234	GT	AAG
(GTG)	 AG	97467-97528	GT	GGG
(GAC)	 AG	97742-97872	GT	AAG
(GTT)	 AG	98279-98285	GG	AGG
-recovered pasa_asmbl_38445.p1, initial, 94074, 94172
-recovered pasa_asmbl_38445.p1, internal, 94074, 94172
-recovered pasa_asmbl_38445.p1, internal, 94672, 94807
-recovered pasa_asmbl_38445.p1, internal, 95163, 95287
-recovered pasa_asmbl_38445.p1, internal, 95678, 95723
-recovered pasa_asmbl_38445.p1, internal, 95907, 96050
-recovered pasa_asmbl_38445.p1, internal, 96687, 96876
-recovered pasa_asmbl_38445.p1, internal, 96982, 97048
-recovered pasa_asmbl_38445.p1, internal, 97153, 97234
-recovered pasa_asmbl_38445.p1, internal, 97467, 97528
-recovered pasa_asmbl_38445.p1, internal, 97742, 97872
Couldn't classify 233202, 233339
Sorry, prediction pasa_asmbl_38557.p1 fails validation.
(ATG)	 AG	232272-232318	GT	ATG
(AGG)	 AG	232639-232762	GT	AGG
(ATG)	 AG	233202-233339	GT	AGG
-recovered pasa_asmbl_38557.p1, initial, 232272, 232318
-recovered pasa_asmbl_38557.p1, initial, 233202, 233339
-recovered pasa_asmbl_38557.p1, internal, 232272, 232318
-recovered pasa_asmbl_38557.p1, internal, 232639, 232762
-recovered pasa_asmbl_38557.p1, internal, 233202, 233339
Valid prediction for Augustus_model.g40426.t1
Valid prediction for snap_scaffold_28-snap.1925-T1
Valid prediction for GeneMark_model.105745_t
Valid prediction for GeneMark_model.105769_t
Valid prediction for snap_scaffold_28-snap.1916-T1
Valid prediction for GeneMark_model.105792_t
Valid prediction for snap_scaffold_28-snap.1907-T1
Valid prediction for GeneMark_model.105738_t
Valid prediction for snap_scaffold_28-snap.1936-T1
Valid prediction for GeneMark_model.105777_t
Valid prediction for snap_scaffold_28-snap.1913-T1
Valid prediction for snap_scaffold_28-snap.1928-T1
Valid prediction for GeneMark_model.105779_t
Valid prediction for snap_scaffold_28-snap.1903-T1
Valid prediction for GeneMark_model.105766_t
Valid prediction for snap_scaffold_28-snap.1930-T1
Valid prediction for GeneMark_model.105786_t
Valid prediction for snap_scaffold_28-snap.1899-T1
Valid prediction for GlimmerHMM_glimmerT_60730-T1
Valid prediction for GeneMark_model.105758_t
Valid prediction for snap_scaffold_28-snap.1939-T1
Valid prediction for GeneMark_model.105733_t
Valid prediction for HiQ_model.g40436.t1
Valid prediction for GlimmerHMM_glimmerT_60719-T1
Valid prediction for snap_scaffold_28-snap.1941-T1
Valid prediction for GlimmerHMM_glimmerT_60716-T1
Valid prediction for GlimmerHMM_glimmerT_60722-T1
Couldn't classify 79100, 79231
Couldn't classify 82333, 82551
Sorry, prediction pasa_asmbl_38439.p1 fails validation.
(CTG)	 TC	79100-79231	GT	AGG
(ACC)	 AG	79541-79669	GT	AGG
(GAT)	 AG	79885-80058	GT	AGG
(CGG)	 AG	80640-80708	GT	AGG
(TTG)	 AG	82333-82551	TA	GGT
-recovered pasa_asmbl_38439.p1, internal, 79541, 79669
-recovered pasa_asmbl_38439.p1, internal, 79885, 80058
-recovered pasa_asmbl_38439.p1, internal, 80640, 80708
Valid prediction for GlimmerHMM_glimmerT_60725-T1
Valid prediction for GeneMark_model.105800_t
Valid prediction for GlimmerHMM_glimmerT_60711-T1
Valid prediction for snap_scaffold_28-snap.1946-T1
Valid prediction for snap_scaffold_28-snap.1947-T1
Valid prediction for GeneMark_model.105802_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_28-snap.1919-T1
Valid prediction for snap_scaffold_28-snap.1942-T1
Valid prediction for GeneMark_model.105748_t
Valid prediction for GlimmerHMM_glimmerT_60713-T1
Valid prediction for GeneMark_model.105740_t
Valid prediction for GeneMark_model.105735_t
Valid prediction for Augustus_model.g40423.t1
Valid prediction for Augustus_model.g40419.t1
Valid prediction for snap_scaffold_28-snap.1927-T1
Valid prediction for GeneMark_model.105744_t
Valid prediction for snap_scaffold_28-snap.1902-T1
Valid prediction for GeneMark_model.105778_t
Valid prediction for GeneMark_model.105759_t
Valid prediction for GeneMark_model.105785_t
Valid prediction for GlimmerHMM_glimmerT_60724-T1
Valid prediction for Augustus_model.g40431.t1
Valid prediction for Augustus_model.g40421.t1
Valid prediction for GeneMark_model.105767_t
Valid prediction for GeneMark_model.105803_t
Valid prediction for snap_scaffold_28-snap.1926-T1
Valid prediction for GeneMark_model.105752_t
Valid prediction for GlimmerHMM_glimmerT_60712-T1
Valid prediction for GlimmerHMM_glimmerT_60717-T1
Valid prediction for snap_scaffold_28-snap.1937-T1
Valid prediction for GeneMark_model.105746_t
Valid prediction for GeneMark_model.105755_t
Valid prediction for snap_scaffold_28-snap.1906-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.1909-T1
Couldn't classify 235146, 235293
Sorry, prediction pasa_asmbl_37790.p1 fails validation.
(ATG)	 GC	224391-224418	GT	CGG
(ACC)	 AG	226843-226937	GT	CGG
(GCG)	 AG	227360-227574	GT	AGG
(GTC)	 AG	227717-227828	GT	AGG
(GCT)	 AG	229355-229612	GT	AGG
(CTG)	 AG	230136-230326	GT	AGG
(GGT)	 AG	230409-230547	GT	AGG
(AGT)	 AG	230781-230912	GT	TGG
(GTG)	 AG	231354-231474	GT	GGG
(ACC)	 AG	231977-232128	GT	AGG
(TGG)	 AG	232313-232426	GT	CTG
(GGC)	 AG	232516-232647	GT	AGG
(GGC)	 AG	232824-232955	GT	AGG
(GCC)	 AG	233323-233483	GT	AGG
(CCT)	 AG	233721-233809	GT	AGG
(CCA)	 AG	234326-234509	GT	AGG
(ACT)	 AG	235146-235293	CG	CCC
-recovered pasa_asmbl_37790.p1, initial, 224391, 224418
-recovered pasa_asmbl_37790.p1, internal, 226843, 226937
-recovered pasa_asmbl_37790.p1, internal, 227360, 227574
-recovered pasa_asmbl_37790.p1, internal, 227717, 227828
-recovered pasa_asmbl_37790.p1, internal, 229355, 229612
-recovered pasa_asmbl_37790.p1, internal, 230136, 230326
-recovered pasa_asmbl_37790.p1, internal, 230409, 230547
-recovered pasa_asmbl_37790.p1, internal, 230781, 230912
-recovered pasa_asmbl_37790.p1, internal, 231354, 231474
-recovered pasa_asmbl_37790.p1, internal, 231977, 232128
-recovered pasa_asmbl_37790.p1, internal, 232313, 232426
-recovered pasa_asmbl_37790.p1, internal, 232516, 232647
-recovered pasa_asmbl_37790.p1, internal, 232824, 232955
-recovered pasa_asmbl_37790.p1, internal, 233323, 233483
-recovered pasa_asmbl_37790.p1, internal, 233721, 233809
-recovered pasa_asmbl_37790.p1, internal, 234326, 234509
Valid prediction for snap_scaffold_28-snap.1924-T1
Valid prediction for snap_scaffold_28-snap.1944-T1
Valid prediction for GlimmerHMM_glimmerT_60721-T1
Valid prediction for snap_scaffold_28-snap.1945-T1
Valid prediction for HiQ_model.g40418.t1
Valid prediction for snap_scaffold_28-snap.1920-T1
Valid prediction for GeneMark_model.105750_t
Valid prediction for snap_scaffold_28-snap.1934-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.105754_t
Valid prediction for Augustus_model.g40429.t1
Valid prediction for snap_scaffold_28-snap.1912-T1
Valid prediction for GlimmerHMM_glimmerT_60715-T1
Valid prediction for snap_scaffold_28-snap.1932-T1
Valid prediction for GeneMark_model.105734_t
Valid prediction for snap_scaffold_28-snap.1922-T1
Valid prediction for Augustus_model.g40425.t1
Valid prediction for GeneMark_model.105742_t
Valid prediction for GlimmerHMM_glimmerT_60723-T1
Valid prediction for snap_scaffold_28-snap.1948-T1
Couldn't classify 81606, 81751
Couldn't classify 85116, 85174
Sorry, prediction pasa_asmbl_37801.p1 fails validation.
(GTG)	 AT	81606-81751	GT	AGG
(ATG)	 AG	82640-82736	GT	TGG
(GTG)	 AG	82936-83033	GT	TGG
(GTA)	 AG	83755-83894	GT	AGG
(GGT)	 AG	85116-85174	GT	TGG
-recovered pasa_asmbl_37801.p1, initial, 82640, 82736
-recovered pasa_asmbl_37801.p1, internal, 82640, 82736
-recovered pasa_asmbl_37801.p1, internal, 82936, 83033
-recovered pasa_asmbl_37801.p1, internal, 83755, 83894
-recovered pasa_asmbl_37801.p1, internal, 85116, 85174
Valid prediction for GeneMark_model.105789_t
Valid prediction for GeneMark_model.105788_t
Valid prediction for pasa_asmbl_37795.p1
Valid prediction for snap_scaffold_28-snap.1900-T1
Valid prediction for GeneMark_model.105798_t
Valid prediction for GlimmerHMM_glimmerT_60718-T1
Valid prediction for GeneMark_model.105797_t
Valid prediction for GlimmerHMM_glimmerT_60729-T1
Valid prediction for GeneMark_model.105783_t
Valid prediction for GeneMark_model.105773_t
Valid prediction for snap_scaffold_28-snap.1929-T1
Valid prediction for GeneMark_model.105737_t
Valid prediction for GeneMark_model.105794_t
Valid prediction for GeneMark_model.105774_t
Valid prediction for GlimmerHMM_glimmerT_60727-T1
Valid prediction for snap_scaffold_28-snap.1910-T1
Valid prediction for GeneMark_model.105787_t
Valid prediction for GeneMark_model.105801_t
Valid prediction for GlimmerHMM_glimmerT_60728-T1
Valid prediction for snap_scaffold_28-snap.1904-T1
Valid prediction for GlimmerHMM_glimmerT_60734-T1
Valid prediction for GeneMark_model.105760_t
Couldn't classify 217306, 217342
Couldn't classify 218263, 218454
Sorry, prediction pasa_asmbl_37794.p1 fails validation.
(AAC)	 AC	217306-217342	GT	AGG
(ACA)	 AG	217534-217720	GT	TCG
(GGC)	 AG	217897-218053	GT	AAG
(AGC)	 AG	218263-218454	AG	CCA
-recovered pasa_asmbl_37794.p1, internal, 217534, 217720
-recovered pasa_asmbl_37794.p1, internal, 217897, 218053
Valid prediction for GeneMark_model.105796_t
Couldn't classify 87237, 87305
Sorry, prediction pasa_asmbl_37889.p1 fails validation.
(CTG)	 AG	87237-87305	GT	TAG
(CTG)	 AG	87666-87818	GT	GGG
(GAG)	 AG	88191-88310	GT	AGG
(GAC)	 AG	88457-88560	GT	AGG
(AGG)	 AG	89575-89710	AC	AAA
-recovered pasa_asmbl_37889.p1, terminal, 89575, 89710
-recovered pasa_asmbl_37889.p1, internal, 87237, 87305
-recovered pasa_asmbl_37889.p1, internal, 87666, 87818
-recovered pasa_asmbl_37889.p1, internal, 88191, 88310
-recovered pasa_asmbl_37889.p1, internal, 88457, 88560
Valid prediction for GeneMark_model.105791_t
Valid prediction for GeneMark_model.105781_t
Valid prediction for snap_scaffold_28-snap.1917-T1
Couldn't classify 221645, 221787
Sorry, prediction pasa_asmbl_37878.p1 fails validation.
(AGG)	 GC	221645-221787	GT	AAG
(GTT)	 AG	222324-222405	GT	AGG
(ATG)	 AG	222633-222779	GA	GAG
-recovered pasa_asmbl_37878.p1, terminal, 222633, 222779
-recovered pasa_asmbl_37878.p1, internal, 222324, 222405
Valid prediction for GeneMark_model.105768_t
Valid prediction for GlimmerHMM_glimmerT_60714-T1
Valid prediction for GeneMark_model.105749_t
Valid prediction for CodingQuarry_transcript_43643-T1
Valid prediction for snap_scaffold_28-snap.1935-T1
Valid prediction for GeneMark_model.105771_t
Valid prediction for snap_scaffold_28-snap.1938-T1
Valid prediction for snap_scaffold_28-snap.1897-T1
Valid prediction for GeneMark_model.105776_t
Valid prediction for Augustus_model.g40430.t1
Valid prediction for GeneMark_model.105793_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4170, rend_intergenic: 2072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16219, rend_intergenic: 4342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24549, rend_intergenic: 16563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26610, rend_intergenic: 25584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40806, rend_intergenic: 26748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43466, rend_intergenic: 41080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62463, rend_intergenic: 43563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74171, rend_intergenic: 62743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90651, rend_intergenic: 76690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99966, rend_intergenic: 95111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114339, rend_intergenic: 111163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116704, rend_intergenic: 114495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137362, rend_intergenic: 123295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142284, rend_intergenic: 138287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153763, rend_intergenic: 142795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162704, rend_intergenic: 159180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164359, rend_intergenic: 163713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171554, rend_intergenic: 164951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181053, rend_intergenic: 179745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181332, rend_intergenic: 181204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189755, rend_intergenic: 182148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196655, rend_intergenic: 191194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198142, rend_intergenic: 197789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204352, rend_intergenic: 204134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219528, rend_intergenic: 216571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223058, rend_intergenic: 221788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233687, rend_intergenic: 228894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239515, rend_intergenic: 237047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243629, rend_intergenic: 239827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246594, rend_intergenic: 244938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 249526
-exon list size: 1023


building trellis

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55.8    
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56.8    
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57.9    
58.0    
58.0    
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58.2    
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58.6    
58.7    
58.8    
58.9    
59.0    
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59.2    
59.3    
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59.6    
59.7    
59.8    
59.9    
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60.8    
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61.9    
62.0    
62.0    
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63.0    
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63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
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64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
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65.6    
65.7    
65.8    
65.9    
66.0    
66.0    
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66.2    
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67.0    
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67.7    
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68.0    
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68.8    
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69.0    
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69.9    
70.0    
70.0    
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72.0    
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76.9    
77.0    
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78.0    
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80.0    
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82.0    
82.0    
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86.0    
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89.0    
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90.0    
90.0    
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91.0    
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91.7    
91.8    
91.9    
92.0    
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92.8    
92.9    
93.0    
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93.9    
94.0    
94.0    
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95.0    
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96.0    
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96.8    
96.9    
97.0    
97.1    
97.2    
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97.6    
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97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 4170, rend_intergenic: 2072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16219, rend_intergenic: 4342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24549, rend_intergenic: 16563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26610, rend_intergenic: 25584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40806, rend_intergenic: 26748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43466, rend_intergenic: 41080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62463, rend_intergenic: 43563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74171, rend_intergenic: 62743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90651, rend_intergenic: 76690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99966, rend_intergenic: 95111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114339, rend_intergenic: 111163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116704, rend_intergenic: 114495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137362, rend_intergenic: 123295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142284, rend_intergenic: 138287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153763, rend_intergenic: 142795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162704, rend_intergenic: 159180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164359, rend_intergenic: 163713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171554, rend_intergenic: 164951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181053, rend_intergenic: 179745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181332, rend_intergenic: 181204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189755, rend_intergenic: 182148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196655, rend_intergenic: 191194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198142, rend_intergenic: 197789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204352, rend_intergenic: 204134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219528, rend_intergenic: 216571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223058, rend_intergenic: 221788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233687, rend_intergenic: 228894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239515, rend_intergenic: 237047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243629, rend_intergenic: 239827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246594, rend_intergenic: 244938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support