-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_8001845-8198141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_43634-T1
Valid prediction for GeneMark_model.105644_t
Valid prediction for GeneMark_model.105651_t
Valid prediction for snap_scaffold_28-snap.1819-T1
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 57381, 57592
Couldn't classify 58344, 58467
Sorry, prediction pasa_asmbl_38511.p1 fails validation.
(GGT)	 CA	57381-57592	GT	GAG
(TCA)	 AG	58344-58467	AC	CCA
Valid prediction for GeneMark_model.105669_t
Valid prediction for GeneMark_model.105684_t
Valid prediction for GlimmerHMM_glimmerT_60655-T1
Valid prediction for Augustus_model.g40392.t1
Valid prediction for GeneMark_model.105658_t
Valid prediction for snap_scaffold_28-snap.1852-T1
Valid prediction for GeneMark_model.105637_t
Valid prediction for GeneMark_model.105676_t
Valid prediction for GeneMark_model.105673_t
Valid prediction for GlimmerHMM_glimmerT_60673-T1
Valid prediction for GeneMark_model.105665_t
Valid prediction for snap_scaffold_28-snap.1833-T1
Valid prediction for GeneMark_model.105642_t
Valid prediction for pasa_asmbl_38411.p1
Valid prediction for GeneMark_model.105646_t
Valid prediction for GlimmerHMM_glimmerT_60675-T1
Valid prediction for GeneMark_model.105635_t
Valid prediction for GlimmerHMM_glimmerT_60659-T1
Valid prediction for GeneMark_model.105663_t
Valid prediction for Augustus_model.g40376.t1
Valid prediction for GeneMark_model.105689_t
Couldn't classify 106714, 106738
Couldn't classify 112915, 113258
Sorry, prediction pasa_asmbl_38417.p1 fails validation.
(CTG)	 AG	106714-106738	GT	CTG
(ACG)	 AG	108392-108513	GT	AGG
(GAG)	 AG	108980-109154	GT	AGG
(ATA)	 AG	109619-109783	GT	AGG
(GGT)	 AG	110089-110289	GT	AGG
(AGT)	 AG	112915-113258	CC	GAC
-recovered pasa_asmbl_38417.p1, internal, 106714, 106738
-recovered pasa_asmbl_38417.p1, internal, 108392, 108513
-recovered pasa_asmbl_38417.p1, internal, 108980, 109154
-recovered pasa_asmbl_38417.p1, internal, 109619, 109783
-recovered pasa_asmbl_38417.p1, internal, 110089, 110289
Valid prediction for GlimmerHMM_glimmerT_60665-T1
Valid prediction for Augustus_model.g40381.t1
Valid prediction for snap_scaffold_28-snap.1826-T1
Valid prediction for GlimmerHMM_glimmerT_60656-T1
Valid prediction for pasa_asmbl_38419.p1
Valid prediction for GlimmerHMM_glimmerT_60651-T1
Valid prediction for GeneMark_model.105657_t
Valid prediction for snap_scaffold_28-snap.1811-T1
Valid prediction for snap_scaffold_28-snap.1838-T1
Valid prediction for GeneMark_model.105653_t
Valid prediction for snap_scaffold_28-snap.1831-T1
Valid prediction for snap_scaffold_28-snap.1822-T1
Couldn't classify 65196, 65247
Sorry, prediction pasa_asmbl_38415.p1 fails validation.
(TCC)	 TC	65196-65247	GT	CGG
(GAC)	 AG	65457-65557	GT	TGG
(TGT)	 AG	66159-66329	GT	AGG
(AGG)	 AG	67373-67483	TG	AGT
-recovered pasa_asmbl_38415.p1, terminal, 67373, 67483
-recovered pasa_asmbl_38415.p1, internal, 65457, 65557
-recovered pasa_asmbl_38415.p1, internal, 66159, 66329
Valid prediction for GlimmerHMM_glimmerT_60658-T1
Valid prediction for snap_scaffold_28-snap.1850-T1
Valid prediction for snap_scaffold_28-snap.1827-T1
Valid prediction for CodingQuarry_transcript_43633-T1
Valid prediction for GeneMark_model.105661_t
Valid prediction for CodingQuarry_transcript_43631-T1
Valid prediction for GlimmerHMM_glimmerT_60667-T1
Valid prediction for HiQ_model.g40378.t1
Valid prediction for HiQ_model.g40389.t1
Valid prediction for GeneMark_model.105659_t
Valid prediction for GlimmerHMM_glimmerT_60650-T1
Valid prediction for GeneMark_model.105678_t
Valid prediction for GeneMark_model.105671_t
Valid prediction for GeneMark_model.105650_t
Valid prediction for GlimmerHMM_glimmerT_60670-T1
Valid prediction for snap_scaffold_28-snap.1842-T1
Valid prediction for snap_scaffold_28-snap.1821-T1
Valid prediction for snap_scaffold_28-snap.1849-T1
Valid prediction for snap_scaffold_28-snap.1854-T1
Valid prediction for GlimmerHMM_glimmerT_60660-T1
Valid prediction for snap_scaffold_28-snap.1834-T1
Valid prediction for snap_scaffold_28-snap.1857-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g40380.t1
Valid prediction for snap_scaffold_28-snap.1848-T1
Valid prediction for GeneMark_model.105672_t
Valid prediction for HiQ_model.g40386.t1
Valid prediction for GeneMark_model.105648_t
Valid prediction for GlimmerHMM_glimmerT_60654-T1
Valid prediction for Augustus_model.g40383.t1
Valid prediction for snap_scaffold_28-snap.1823-T1
Valid prediction for GlimmerHMM_glimmerT_60684-T1
Valid prediction for snap_scaffold_28-snap.1816-T1
Valid prediction for snap_scaffold_28-snap.1844-T1
Valid prediction for GeneMark_model.105638_t
Valid prediction for CodingQuarry_transcript_43630-T1
Couldn't classify 101988, 102138
Couldn't classify 106554, 106659
Sorry, prediction pasa_asmbl_38573.p1 fails validation.
(ACG)	 TG	101988-102138	GT	GGG
(CTA)	 AG	104140-104254	GT	AGG
(GGG)	 AG	106554-106659	GA	GAG
-recovered pasa_asmbl_38573.p1, internal, 104140, 104254
Valid prediction for GlimmerHMM_glimmerT_60668-T1
Valid prediction for snap_scaffold_28-snap.1843-T1
Valid prediction for GlimmerHMM_glimmerT_60652-T1
Valid prediction for GeneMark_model.105688_t
Valid prediction for GeneMark_model.105640_t
Valid prediction for GeneMark_model.105687_t
Valid prediction for GlimmerHMM_glimmerT_60663-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 54165, 54566
Couldn't classify 55224, 55406
Sorry, prediction pasa_asmbl_37768.p1 fails validation.
(GAG)	 GC	54165-54566	GT	AGG
(GTG)	 AG	54691-54843	GT	AGG
(GGT)	 AG	55224-55406	TG	CGT
-recovered pasa_asmbl_37768.p1, internal, 54691, 54843
Valid prediction for snap_scaffold_28-snap.1853-T1
Valid prediction for GeneMark_model.105662_t
Valid prediction for GeneMark_model.105674_t
Valid prediction for snap_scaffold_28-snap.1813-T1
Valid prediction for Augustus_model.g40385.t1
Valid prediction for GeneMark_model.105656_t
Valid prediction for snap_scaffold_28-snap.1810-T1
Valid prediction for snap_scaffold_28-snap.1841-T1
Valid prediction for GeneMark_model.105645_t
Valid prediction for GlimmerHMM_glimmerT_60678-T1
Valid prediction for GlimmerHMM_glimmerT_60677-T1
Valid prediction for snap_scaffold_28-snap.1837-T1
Valid prediction for GeneMark_model.105668_t
Couldn't classify 160738, 160890
Couldn't classify 163258, 163323
Sorry, prediction pasa_asmbl_37765.p1 fails validation.
(ACG)	 CC	160738-160890	GT	AGG
(GTG)	 AG	161092-161178	GT	AGG
(GTT)	 AG	161748-161879	GT	TGG
(GAC)	 AG	162467-162523	GT	TGG
(ACG)	 AG	163258-163323	GT	TGG
-recovered pasa_asmbl_37765.p1, internal, 161092, 161178
-recovered pasa_asmbl_37765.p1, internal, 161748, 161879
-recovered pasa_asmbl_37765.p1, internal, 162467, 162523
-recovered pasa_asmbl_37765.p1, internal, 163258, 163323
Valid prediction for snap_scaffold_28-snap.1824-T1
Valid prediction for GlimmerHMM_glimmerT_60680-T1
Valid prediction for snap_scaffold_28-snap.1825-T1
Valid prediction for snap_scaffold_28-snap.1836-T1
Valid prediction for snap_scaffold_28-snap.1815-T1
Valid prediction for GlimmerHMM_glimmerT_60671-T1
Valid prediction for Augustus_model.g40390.t1
Valid prediction for snap_scaffold_28-snap.1851-T1
Valid prediction for Augustus_model.g40387.t1
Valid prediction for GeneMark_model.105660_t
Valid prediction for GeneMark_model.105636_t
Valid prediction for GeneMark_model.105666_t
Valid prediction for GlimmerHMM_glimmerT_60653-T1
Valid prediction for GeneMark_model.105649_t
Valid prediction for snap_scaffold_28-snap.1812-T1
Valid prediction for GeneMark_model.105652_t
Valid prediction for GlimmerHMM_glimmerT_60666-T1
Valid prediction for GlimmerHMM_glimmerT_60672-T1
Valid prediction for snap_scaffold_28-snap.1829-T1
Valid prediction for GlimmerHMM_glimmerT_60661-T1
Valid prediction for snap_scaffold_28-snap.1839-T1
Valid prediction for GeneMark_model.105690_t
Valid prediction for snap_scaffold_28-snap.1818-T1
Valid prediction for GlimmerHMM_glimmerT_60676-T1
Valid prediction for snap_scaffold_28-snap.1830-T1
Valid prediction for GlimmerHMM_glimmerT_60662-T1
Valid prediction for GlimmerHMM_glimmerT_60685-T1
Valid prediction for GlimmerHMM_glimmerT_60669-T1
Couldn't classify 27166, 27295
Couldn't classify 30259, 30501
Sorry, prediction pasa_asmbl_37771.p2 fails validation.
(GTG)	 AG	27166-27295	GT	TGG
(GCT)	 AG	28180-28361	GT	CGG
(GAG)	 AG	28464-28583	GT	CGG
(CAA)	 AG	28768-28872	GT	AGG
(GGC)	 AG	29013-29158	GT	AGG
(GTT)	 AG	29542-29599	GT	AGG
(AGC)	 AG	30259-30501	GT	TCG
-recovered pasa_asmbl_37771.p2, internal, 27166, 27295
-recovered pasa_asmbl_37771.p2, internal, 28180, 28361
-recovered pasa_asmbl_37771.p2, internal, 28464, 28583
-recovered pasa_asmbl_37771.p2, internal, 28768, 28872
-recovered pasa_asmbl_37771.p2, internal, 29013, 29158
-recovered pasa_asmbl_37771.p2, internal, 29542, 29599
-recovered pasa_asmbl_37771.p2, internal, 30259, 30501
Valid prediction for GeneMark_model.105654_t
Valid prediction for GeneMark_model.105639_t
Valid prediction for Augustus_model.g40388.t1
Valid prediction for snap_scaffold_28-snap.1856-T1
Valid prediction for Augustus_model.g40382.t1
Valid prediction for snap_scaffold_28-snap.1814-T1
Valid prediction for snap_scaffold_28-snap.1832-T1
Valid prediction for GeneMark_model.105670_t
Valid prediction for Augustus_model.g40377.t1
Valid prediction for snap_scaffold_28-snap.1847-T1
Valid prediction for Augustus_model.g40375.t1
Valid prediction for Augustus_model.g40391.t1
Couldn't classify 13779, 13901
Sorry, prediction GeneMark_model.105686_t fails validation.
(ATG)	 GA	12537-12661	GT	GGG
(TTG)	 AG	12691-12771	GT	GAG
(AGC)	 AG	12815-12901	GT	AGG
(GGG)	 AG	13005-13136	GT	GAG
(GCG)	 AG	13404-13419	GT	TGG
(TCG)	 AG	13779-13901	GT	TGG
-recovered GeneMark_model.105686_t, initial, 12537, 12661
-recovered GeneMark_model.105686_t, internal, 12691, 12771
-recovered GeneMark_model.105686_t, internal, 12815, 12901
-recovered GeneMark_model.105686_t, internal, 13005, 13136
-recovered GeneMark_model.105686_t, internal, 13404, 13419
-recovered GeneMark_model.105686_t, internal, 13779, 13901
Valid prediction for snap_scaffold_28-snap.1855-T1
Valid prediction for GlimmerHMM_glimmerT_60682-T1
Couldn't classify 192024, 192126
Sorry, prediction pasa_asmbl_37905.p1 fails validation.
(TTC)	 AC	192024-192126	GT	AGG
(GTG)	 AG	192225-192317	GT	AGG
(GTG)	 AG	192469-192591	GT	CGG
(TGG)	 AG	192689-192763	GT	AGG
(GAT)	 AG	192965-193063	GT	AGG
(TGA)	 AG	193188-193305	GT	AGG
(AGA)	 AG	193394-193497	GT	ATG
(TTT)	 AG	193761-193908	GT	AGG
(TTA)	 AG	194020-194163	GT	AGG
(GTT)	 AG	194283-194371	GT	AGG
(GAG)	 AG	194455-194576	AA	AGA
add_exon() Sorry, pasa_asmbl_37905.p1 193188-193305-terminal-3 is invalid.
-recovered pasa_asmbl_37905.p1, terminal, 193188, 193305
-recovered pasa_asmbl_37905.p1, terminal, 194455, 194576
-recovered pasa_asmbl_37905.p1, internal, 192225, 192317
-recovered pasa_asmbl_37905.p1, internal, 192469, 192591
-recovered pasa_asmbl_37905.p1, internal, 192689, 192763
-recovered pasa_asmbl_37905.p1, internal, 192965, 193063
-recovered pasa_asmbl_37905.p1, internal, 193188, 193305
-recovered pasa_asmbl_37905.p1, internal, 193394, 193497
-recovered pasa_asmbl_37905.p1, internal, 193761, 193908
-recovered pasa_asmbl_37905.p1, internal, 194020, 194163
-recovered pasa_asmbl_37905.p1, internal, 194283, 194371
Valid prediction for GlimmerHMM_glimmerT_60664-T1
Valid prediction for snap_scaffold_28-snap.1845-T1
Valid prediction for CodingQuarry_transcript_43629-T1
Valid prediction for snap_scaffold_28-snap.1820-T1
Valid prediction for GeneMark_model.105655_t
Valid prediction for GeneMark_model.105675_t
Valid prediction for Augustus_model.g40394.t1
Valid prediction for GeneMark_model.105682_t
Valid prediction for snap_scaffold_28-snap.1846-T1
Valid prediction for CodingQuarry_transcript_43632-T1
Valid prediction for GlimmerHMM_glimmerT_60683-T1
Valid prediction for Augustus_model.g40395.t1
Valid prediction for Augustus_model.g40379.t1
Valid prediction for GeneMark_model.105685_t
Valid prediction for snap_scaffold_28-snap.1840-T1
Valid prediction for GlimmerHMM_glimmerT_60674-T1
Valid prediction for snap_scaffold_28-snap.1835-T1
Valid prediction for snap_scaffold_28-snap.1828-T1
Valid prediction for GlimmerHMM_glimmerT_60657-T1
Couldn't classify 78219, 78569
Sorry, prediction pasa_asmbl_37766.p1 fails validation.
(CTG)	 GG	78219-78569	AC	AAA
Couldn't classify 49438, 49479
Couldn't classify 53797, 53958
Sorry, prediction pasa_asmbl_37769.p1 fails validation.
(AGA)	 GC	49438-49479	GT	AGG
(GAC)	 AG	50318-50456	GT	TGG
(ATG)	 AG	50593-50700	GT	AGG
(AGT)	 AG	51304-51381	GT	GAG
(GGT)	 AG	51987-52045	GT	AGG
(GCA)	 AG	52533-52642	GT	AGG
(GTC)	 AG	52734-52846	GT	GGG
(GCT)	 AG	53229-53305	GT	AGG
(GTG)	 AG	53797-53958	GA	ATG
add_exon() Sorry, pasa_asmbl_37769.p1 50593-50700-initial-1 is invalid.
-recovered pasa_asmbl_37769.p1, initial, 50593, 50700
-recovered pasa_asmbl_37769.p1, internal, 50318, 50456
-recovered pasa_asmbl_37769.p1, internal, 50593, 50700
-recovered pasa_asmbl_37769.p1, internal, 51304, 51381
-recovered pasa_asmbl_37769.p1, internal, 51987, 52045
-recovered pasa_asmbl_37769.p1, internal, 52533, 52642
-recovered pasa_asmbl_37769.p1, internal, 52734, 52846
-recovered pasa_asmbl_37769.p1, internal, 53229, 53305
Valid prediction for GeneMark_model.105647_t
Valid prediction for GlimmerHMM_glimmerT_60681-T1
Valid prediction for GeneMark_model.105677_t
Valid prediction for snap_scaffold_28-snap.1817-T1
Valid prediction for GeneMark_model.105681_t
Valid prediction for GeneMark_model.105641_t
Valid prediction for GeneMark_model.105679_t
Valid prediction for GeneMark_model.105643_t
Valid prediction for Augustus_model.g40393.t1
Valid prediction for Augustus_model.g40384.t1
Valid prediction for GeneMark_model.105664_t
Valid prediction for GlimmerHMM_glimmerT_60679-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18396, rend_intergenic: 7014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28014, rend_intergenic: 23643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40688, rend_intergenic: 37492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42279, rend_intergenic: 41278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47529, rend_intergenic: 45424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67483, rend_intergenic: 57064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96640, rend_intergenic: 86917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97281, rend_intergenic: 97019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99830, rend_intergenic: 98198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102449, rend_intergenic: 99849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113766, rend_intergenic: 105697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124141, rend_intergenic: 122967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147332, rend_intergenic: 134502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149146, rend_intergenic: 147493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160515, rend_intergenic: 156916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167858, rend_intergenic: 165155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170102, rend_intergenic: 167886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190378, rend_intergenic: 181705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195533, rend_intergenic: 190595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 196297
-exon list size: 901


building trellis

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24.8    
24.9    
25.0    
25.1    
25.2    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 18396, rend_intergenic: 7014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28014, rend_intergenic: 23643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40688, rend_intergenic: 37492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42279, rend_intergenic: 41278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47529, rend_intergenic: 45424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67483, rend_intergenic: 57064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96640, rend_intergenic: 86917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97281, rend_intergenic: 97019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99830, rend_intergenic: 98198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102449, rend_intergenic: 99849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113766, rend_intergenic: 105697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124141, rend_intergenic: 122967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147332, rend_intergenic: 134502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149146, rend_intergenic: 147493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160515, rend_intergenic: 156916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167858, rend_intergenic: 165155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170102, rend_intergenic: 167886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190378, rend_intergenic: 181705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195533, rend_intergenic: 190595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support