-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_7842327-8006295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_28-snap.1803-T1
Couldn't classify 40788, 41088
Couldn't classify 42038, 42110
Sorry, prediction pasa_asmbl_38407.p1 fails validation.
(CAG)	 GT	40788-41088	GT	CTG
(ATC)	 AG	41438-41564	GT	AGG
(ATC)	 AG	42038-42110	CC	CCC
-recovered pasa_asmbl_38407.p1, internal, 41438, 41564
Valid prediction for snap_scaffold_28-snap.1783-T1
Valid prediction for GeneMark_model.105631_t
Valid prediction for snap_scaffold_28-snap.1782-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g40366.t1
Couldn't classify 73885, 74703
Sorry, prediction GeneMark_model.105603_t fails validation.
(TCT)	 AG	73885-74703	GT	TCG
(GAT)	 AG	74987-75280	GT	AAG
(GGA)	 AG	76446-76496	GT	GAG
(AGA)	 AG	76524-76568	GT	GAG
(AGA)	 AG	76594-76608	GT	GAG
(AGG)	 AG	76644-76688	GT	GTG
(AGA)	 AG	76712-76726	GT	GTG
(AGA)	 AG	76750-76764	GT	GAG
(GGA)	 AG	76790-76810	GT	CAG
(CAG)	 AG	76838-76850	GT	AGG
(GGC)	 AG	76881-76918	GT	AGG
(GAT)	 AG	77094-77154	TC	GAT
-recovered GeneMark_model.105603_t, terminal, 74987, 75280
-recovered GeneMark_model.105603_t, terminal, 77094, 77154
-recovered GeneMark_model.105603_t, internal, 73885, 74703
-recovered GeneMark_model.105603_t, internal, 74987, 75280
-recovered GeneMark_model.105603_t, internal, 76446, 76496
-recovered GeneMark_model.105603_t, internal, 76524, 76568
-recovered GeneMark_model.105603_t, internal, 76594, 76608
-recovered GeneMark_model.105603_t, internal, 76644, 76688
-recovered GeneMark_model.105603_t, internal, 76712, 76726
-recovered GeneMark_model.105603_t, internal, 76750, 76764
-recovered GeneMark_model.105603_t, internal, 76790, 76810
-recovered GeneMark_model.105603_t, internal, 76838, 76850
-recovered GeneMark_model.105603_t, internal, 76881, 76918
Valid prediction for snap_scaffold_28-snap.1806-T1
Valid prediction for GlimmerHMM_glimmerT_60637-T1
Valid prediction for GeneMark_model.105625_t
Valid prediction for GeneMark_model.105612_t
Valid prediction for snap_scaffold_28-snap.1804-T1
Valid prediction for GeneMark_model.105633_t
Valid prediction for GeneMark_model.105618_t
Valid prediction for GeneMark_model.105610_t
Valid prediction for GeneMark_model.105584_t
Valid prediction for GeneMark_model.105599_t
Valid prediction for snap_scaffold_28-snap.1786-T1
Valid prediction for GlimmerHMM_glimmerT_60648-T1
Valid prediction for snap_scaffold_28-snap.1808-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.105593_t
Valid prediction for GeneMark_model.105597_t
Valid prediction for snap_scaffold_28-snap.1792-T1
Valid prediction for GeneMark_model.105596_t
Valid prediction for GeneMark_model.105586_t
Valid prediction for GeneMark_model.105614_t
Valid prediction for snap_scaffold_28-snap.1799-T1
Valid prediction for GeneMark_model.105605_t
Valid prediction for snap_scaffold_28-snap.1805-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.105601_t
Valid prediction for GeneMark_model.105621_t
Valid prediction for GlimmerHMM_glimmerT_60639-T1
Valid prediction for GeneMark_model.105607_t
Valid prediction for snap_scaffold_28-snap.1791-T1
Valid prediction for snap_scaffold_28-snap.1787-T1
Valid prediction for GeneMark_model.105608_t
Valid prediction for snap_scaffold_28-snap.1801-T1
Valid prediction for GeneMark_model.105585_t
Valid prediction for GeneMark_model.105620_t
Valid prediction for Augustus_model.g40371.t1
Valid prediction for GlimmerHMM_glimmerT_60629-T1
Valid prediction for GeneMark_model.105588_t
Valid prediction for snap_scaffold_28-snap.1780-T1
Valid prediction for snap_scaffold_28-snap.1809-T1
Valid prediction for GlimmerHMM_glimmerT_60641-T1
Valid prediction for snap_scaffold_28-snap.1794-T1
Valid prediction for GlimmerHMM_glimmerT_60636-T1
Valid prediction for GeneMark_model.105616_t
Valid prediction for GeneMark_model.105627_t
Valid prediction for GlimmerHMM_glimmerT_60632-T1
Valid prediction for GeneMark_model.105629_t
Valid prediction for snap_scaffold_28-snap.1797-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 131994, 132097
Sorry, prediction pasa_asmbl_37758.p1 fails validation.
(ATG)	 CC	130521-130548	GT	GGG
(GGC)	 AG	130671-130786	GT	GGG
(ATG)	 AG	130950-131079	GT	TGG
(GTA)	 AG	131185-131295	GT	AGG
(GTA)	 AG	131418-131544	GT	CCG
(GGG)	 AG	131662-131762	GT	TGG
(GAG)	 AG	131994-132097	GG	GAG
-recovered pasa_asmbl_37758.p1, initial, 130521, 130548
-recovered pasa_asmbl_37758.p1, initial, 130950, 131079
-recovered pasa_asmbl_37758.p1, internal, 130671, 130786
-recovered pasa_asmbl_37758.p1, internal, 130950, 131079
-recovered pasa_asmbl_37758.p1, internal, 131185, 131295
-recovered pasa_asmbl_37758.p1, internal, 131418, 131544
-recovered pasa_asmbl_37758.p1, internal, 131662, 131762
Couldn't classify 178, 280
Sorry, prediction pasa_asmbl_37905.p1 fails validation.
(TTC)	 AC	178-280	GT	AGG
(GTG)	 AG	379-471	GT	AGG
(GTG)	 AG	623-745	GT	CGG
(TGG)	 AG	843-917	GT	AGG
(GAT)	 AG	1119-1217	GT	AGG
(TGA)	 AG	1342-1459	GT	AGG
(AGA)	 AG	1548-1651	GT	ATG
(TTT)	 AG	1915-2062	GT	AGG
(TTA)	 AG	2174-2317	GT	AGG
(GTT)	 AG	2437-2525	GT	AGG
(GAG)	 AG	2609-2730	AA	AGA
add_exon() Sorry, pasa_asmbl_37905.p1 1342-1459-terminal-3 is invalid.
-recovered pasa_asmbl_37905.p1, terminal, 1342, 1459
-recovered pasa_asmbl_37905.p1, terminal, 2609, 2730
-recovered pasa_asmbl_37905.p1, internal, 379, 471
-recovered pasa_asmbl_37905.p1, internal, 623, 745
-recovered pasa_asmbl_37905.p1, internal, 843, 917
-recovered pasa_asmbl_37905.p1, internal, 1119, 1217
-recovered pasa_asmbl_37905.p1, internal, 1342, 1459
-recovered pasa_asmbl_37905.p1, internal, 1548, 1651
-recovered pasa_asmbl_37905.p1, internal, 1915, 2062
-recovered pasa_asmbl_37905.p1, internal, 2174, 2317
-recovered pasa_asmbl_37905.p1, internal, 2437, 2525
Valid prediction for snap_scaffold_28-snap.1785-T1
Valid prediction for GeneMark_model.105595_t
Valid prediction for GeneMark_model.105628_t
Valid prediction for GeneMark_model.105592_t
Valid prediction for GeneMark_model.105632_t
Valid prediction for GlimmerHMM_glimmerT_60649-T1
Valid prediction for GlimmerHMM_glimmerT_60633-T1
Valid prediction for snap_scaffold_28-snap.1784-T1
Valid prediction for snap_scaffold_28-snap.1795-T1
Valid prediction for snap_scaffold_28-snap.1790-T1
Valid prediction for GeneMark_model.105613_t
Valid prediction for Augustus_model.g40368.t1
Valid prediction for GlimmerHMM_glimmerT_60631-T1
Valid prediction for GeneMark_model.105617_t
Valid prediction for snap_scaffold_28-snap.1789-T1
Valid prediction for GeneMark_model.105623_t
Valid prediction for GlimmerHMM_glimmerT_60634-T1
Valid prediction for Augustus_model.g40372.t1
Couldn't classify 158079, 158489
Sorry, prediction pasa_asmbl_37753.p1 fails validation.
(GGA)	 AA	158079-158489	GC	CCG
Valid prediction for GeneMark_model.105609_t
Valid prediction for GlimmerHMM_glimmerT_60630-T1
Valid prediction for GlimmerHMM_glimmerT_60626-T1
Valid prediction for Augustus_model.g40374.t1
Valid prediction for GeneMark_model.105615_t
Valid prediction for HiQ_model.g40365.t1
Couldn't classify 98820, 98825
Sorry, prediction GeneMark_model.105602_t fails validation.
(AGG)	 AG	98820-98825	GT	AGG
(AGG)	 AG	98966-98974	GT	GAG
(TGA)	 AG	99298-99312	GT	TTG
(GGG)	 AG	99610-99732	GT	CGG
(GTT)	 AG	99763-99820	AA	AAA
-recovered GeneMark_model.105602_t, terminal, 99763, 99820
-recovered GeneMark_model.105602_t, internal, 98820, 98825
-recovered GeneMark_model.105602_t, internal, 98966, 98974
-recovered GeneMark_model.105602_t, internal, 99298, 99312
-recovered GeneMark_model.105602_t, internal, 99610, 99732
Valid prediction for GlimmerHMM_glimmerT_60640-T1
Valid prediction for Augustus_model.g40370.t1
Valid prediction for Augustus_model.g40369.t1
Valid prediction for GeneMark_model.105589_t
Valid prediction for GeneMark_model.105622_t
Valid prediction for GlimmerHMM_glimmerT_60643-T1
Valid prediction for GlimmerHMM_glimmerT_60628-T1
Valid prediction for CodingQuarry_transcript_43629-T1
Valid prediction for Augustus_model.g40367.t1
Valid prediction for GlimmerHMM_glimmerT_60642-T1
Valid prediction for snap_scaffold_28-snap.1807-T1
Valid prediction for GlimmerHMM_glimmerT_60647-T1
Valid prediction for GeneMark_model.105598_t
Valid prediction for GlimmerHMM_glimmerT_60635-T1
Couldn't classify 6546, 6593
Couldn't classify 8698, 8735
Sorry, prediction pasa_asmbl_37890.p1 fails validation.
(ACT)	 GG	6546-6593	GT	CTG
(GTA)	 AG	7543-7755	GT	CGG
(AGG)	 AG	8426-8576	GT	AAG
(CCC)	 AG	8698-8735	GT	CGG
-recovered pasa_asmbl_37890.p1, internal, 7543, 7755
-recovered pasa_asmbl_37890.p1, internal, 8426, 8576
-recovered pasa_asmbl_37890.p1, internal, 8698, 8735
Couldn't classify 159283, 159771
Sorry, prediction pasa_asmbl_37752.p1 fails validation.
(GAG)	 GA	159283-159771	CA	AAC
Valid prediction for snap_scaffold_28-snap.1802-T1
Valid prediction for GeneMark_model.105581_t
Valid prediction for GeneMark_model.105583_t
Valid prediction for GeneMark_model.105619_t
Valid prediction for Augustus_model.g40363.t1
Valid prediction for snap_scaffold_28-snap.1793-T1
Valid prediction for GlimmerHMM_glimmerT_60646-T1
Valid prediction for Augustus_model.g40364.t1
Valid prediction for snap_scaffold_28-snap.1800-T1
Valid prediction for GlimmerHMM_glimmerT_60645-T1
Valid prediction for GeneMark_model.105594_t
Valid prediction for GeneMark_model.105626_t
Valid prediction for Augustus_model.g40362.t1
Valid prediction for snap_scaffold_28-snap.1798-T1
Valid prediction for GeneMark_model.105624_t
Valid prediction for GeneMark_model.105590_t
Valid prediction for GeneMark_model.105606_t
Valid prediction for GeneMark_model.105611_t
Valid prediction for Augustus_model.g40373.t1
Valid prediction for GlimmerHMM_glimmerT_60644-T1
Valid prediction for GlimmerHMM_glimmerT_60627-T1
Valid prediction for GlimmerHMM_glimmerT_60638-T1
Valid prediction for GeneMark_model.105600_t
Valid prediction for snap_scaffold_28-snap.1788-T1
Valid prediction for GeneMark_model.105604_t
Valid prediction for GeneMark_model.105630_t
Couldn't classify 9293, 9375
Couldn't classify 10233, 10335
Sorry, prediction pasa_asmbl_37901.p2 fails validation.
(TAT)	 TC	9293-9375	GT	TCG
(GGA)	 AG	9771-9861	GT	CGG
(ATC)	 AG	10007-10125	GT	CTG
(GCA)	 AG	10233-10335	CT	GGC
-recovered pasa_asmbl_37901.p2, internal, 9771, 9861
-recovered pasa_asmbl_37901.p2, internal, 10007, 10125
Valid prediction for GeneMark_model.105587_t
Valid prediction for snap_scaffold_28-snap.1781-T1
Couldn't classify 124096, 124126
Couldn't classify 131994, 132097
Sorry, prediction pasa_asmbl_37757.p1 fails validation.
(CGA)	 AC	124096-124126	GT	GGG
(ATT)	 AG	124880-124916	GT	GGG
(CTA)	 AG	125024-125075	GT	AGG
(CAG)	 AG	125233-125383	GT	AGG
(CGG)	 AG	125602-125616	GT	AGG
(CCG)	 AG	125932-126130	GT	AGG
(CTA)	 AG	126539-126810	GT	CAG
(ACA)	 AG	127073-127238	GT	AGG
(CAT)	 AG	129704-129741	GT	TGG
(GAC)	 AG	130516-130548	GT	GGG
(GGC)	 AG	130671-130786	GT	GGG
(ATG)	 AG	130950-131079	GT	TGG
(GTA)	 AG	131185-131295	GT	AGG
(GTA)	 AG	131418-131544	GT	CCG
(GGG)	 AG	131662-131762	GT	TGG
(GAG)	 AG	131994-132097	GG	GAG
-recovered pasa_asmbl_37757.p1, initial, 130950, 131079
-recovered pasa_asmbl_37757.p1, internal, 124880, 124916
-recovered pasa_asmbl_37757.p1, internal, 125024, 125075
-recovered pasa_asmbl_37757.p1, internal, 125233, 125383
-recovered pasa_asmbl_37757.p1, internal, 125602, 125616
-recovered pasa_asmbl_37757.p1, internal, 125932, 126130
-recovered pasa_asmbl_37757.p1, internal, 126539, 126810
-recovered pasa_asmbl_37757.p1, internal, 127073, 127238
-recovered pasa_asmbl_37757.p1, internal, 129704, 129741
-recovered pasa_asmbl_37757.p1, internal, 130516, 130548
-recovered pasa_asmbl_37757.p1, internal, 130671, 130786
-recovered pasa_asmbl_37757.p1, internal, 130950, 131079
-recovered pasa_asmbl_37757.p1, internal, 131185, 131295
-recovered pasa_asmbl_37757.p1, internal, 131418, 131544
-recovered pasa_asmbl_37757.p1, internal, 131662, 131762
Valid prediction for snap_scaffold_28-snap.1796-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5780, rend_intergenic: 5349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13825, rend_intergenic: 7123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19036, rend_intergenic: 14233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24178, rend_intergenic: 19977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27512, rend_intergenic: 26079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47993, rend_intergenic: 43834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49979, rend_intergenic: 48205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59874, rend_intergenic: 50120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81239, rend_intergenic: 59914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105391, rend_intergenic: 82613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110968, rend_intergenic: 107048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117042, rend_intergenic: 111558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147555, rend_intergenic: 120310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159892, rend_intergenic: 151607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 163969
-exon list size: 927


building trellis

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38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 5780, rend_intergenic: 5349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13825, rend_intergenic: 7123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19036, rend_intergenic: 14233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24178, rend_intergenic: 19977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27512, rend_intergenic: 26079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47993, rend_intergenic: 43834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49979, rend_intergenic: 48205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59874, rend_intergenic: 50120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81239, rend_intergenic: 59914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105391, rend_intergenic: 82613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110968, rend_intergenic: 107048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117042, rend_intergenic: 111558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147555, rend_intergenic: 120310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159892, rend_intergenic: 151607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support