-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_7578780-7846432

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.105512_t
Valid prediction for GlimmerHMM_glimmerT_60616-T1
Valid prediction for Augustus_model.g40349.t1
Valid prediction for GeneMark_model.105542_t
Valid prediction for GeneMark_model.105548_t
Valid prediction for GeneMark_model.105544_t
Valid prediction for snap_scaffold_28-snap.1753-T1
Couldn't classify 138546, 138811
Couldn't classify 139105, 139498
Sorry, prediction pasa_asmbl_38396.p1 fails validation.
(ACG)	 CC	138546-138811	GT	AGG
(GTC)	 AG	139105-139498	GT	AGG
-recovered pasa_asmbl_38396.p1, internal, 139105, 139498
Valid prediction for GeneMark_model.105535_t
Valid prediction for GeneMark_model.105487_t
Valid prediction for snap_scaffold_28-snap.1740-T1
Valid prediction for GeneMark_model.105572_t
Valid prediction for GeneMark_model.105525_t
Valid prediction for GlimmerHMM_glimmerT_60623-T1
Valid prediction for Augustus_model.g40345.t1
Valid prediction for snap_scaffold_28-snap.1729-T1
Valid prediction for CodingQuarry_transcript_43623-T1
Valid prediction for snap_scaffold_28-snap.1779-T1
Valid prediction for GeneMark_model.105550_t
Valid prediction for GlimmerHMM_glimmerT_60599-T1
Valid prediction for GeneMark_model.105490_t
Valid prediction for GlimmerHMM_glimmerT_60604-T1
Valid prediction for GlimmerHMM_glimmerT_60615-T1
Valid prediction for snap_scaffold_28-snap.1755-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g40344.t1
Valid prediction for GeneMark_model.105495_t
Valid prediction for snap_scaffold_28-snap.1771-T1
Valid prediction for GeneMark_model.105504_t
Couldn't classify 111617, 111640
Couldn't classify 113780, 113827
Sorry, prediction pasa_asmbl_38517.p2 fails validation.
(GCC)	 GA	111617-111640	GT	AGG
(AAT)	 AG	111724-111822	GT	AGG
(GAC)	 AG	111956-112054	GT	AGG
(AAC)	 AG	112537-112734	GT	TGG
(AAC)	 AG	113146-113244	GT	AGG
(TCT)	 AG	113780-113827	AT	ACA
-recovered pasa_asmbl_38517.p2, internal, 111724, 111822
-recovered pasa_asmbl_38517.p2, internal, 111956, 112054
-recovered pasa_asmbl_38517.p2, internal, 112537, 112734
-recovered pasa_asmbl_38517.p2, internal, 113146, 113244
Valid prediction for GlimmerHMM_glimmerT_60609-T1
Valid prediction for GeneMark_model.105484_t
Valid prediction for GeneMark_model.105533_t
Valid prediction for Augustus_model.g40347.t1
Couldn't classify 122223, 122251
Couldn't classify 124504, 124739
Sorry, prediction pasa_asmbl_38394.p1 fails validation.
(CTG)	 CT	122223-122251	GT	GCG
(GAA)	 AG	122473-122551	GT	AGG
(TCT)	 AG	122776-122909	GT	GGG
(CTT)	 AG	123109-123333	GT	GGG
(GCC)	 AG	124050-124204	GT	AGG
(ACC)	 AG	124504-124739	GA	CGG
-recovered pasa_asmbl_38394.p1, internal, 122473, 122551
-recovered pasa_asmbl_38394.p1, internal, 122776, 122909
-recovered pasa_asmbl_38394.p1, internal, 123109, 123333
-recovered pasa_asmbl_38394.p1, internal, 124050, 124204
Valid prediction for HiQ_model.g40351.t1
Valid prediction for GeneMark_model.105485_t
Valid prediction for GeneMark_model.105523_t
Valid prediction for snap_scaffold_28-snap.1764-T1
Valid prediction for GlimmerHMM_glimmerT_60605-T1
Valid prediction for GeneMark_model.105546_t
Valid prediction for GeneMark_model.105578_t
Valid prediction for snap_scaffold_28-snap.1735-T1
Valid prediction for GeneMark_model.105565_t
Valid prediction for GeneMark_model.105492_t
Valid prediction for GeneMark_model.105538_t
Valid prediction for GeneMark_model.105514_t
Valid prediction for GlimmerHMM_glimmerT_60612-T1
Valid prediction for GlimmerHMM_glimmerT_60602-T1
Valid prediction for Augustus_model.g40350.t1
Valid prediction for GeneMark_model.105508_t
Valid prediction for CodingQuarry_transcript_43624-T1
Valid prediction for GeneMark_model.105507_t
Valid prediction for GeneMark_model.105557_t
Valid prediction for HiQ_model.g40354.t1
Valid prediction for GlimmerHMM_glimmerT_60595-T1
Valid prediction for Augustus_model.g40348.t1
Valid prediction for snap_scaffold_28-snap.1716-T1
Valid prediction for snap_scaffold_28-snap.1776-T1
Valid prediction for GeneMark_model.105499_t
Valid prediction for pasa_asmbl_38406.p1
Valid prediction for snap_scaffold_28-snap.1769-T1
Valid prediction for GeneMark_model.105505_t
Valid prediction for GeneMark_model.105574_t
Valid prediction for CodingQuarry_transcript_43627-T1
Valid prediction for GlimmerHMM_glimmerT_60583-T1
Valid prediction for GlimmerHMM_glimmerT_60601-T1
Valid prediction for snap_scaffold_28-snap.1773-T1
Valid prediction for GeneMark_model.105503_t
Valid prediction for snap_scaffold_28-snap.1767-T1
Valid prediction for GlimmerHMM_glimmerT_60591-T1
Valid prediction for GeneMark_model.105510_t
Valid prediction for GlimmerHMM_glimmerT_60617-T1
Valid prediction for GlimmerHMM_glimmerT_60619-T1
Valid prediction for GeneMark_model.105531_t
Valid prediction for snap_scaffold_28-snap.1763-T1
Valid prediction for GeneMark_model.105564_t
Valid prediction for GeneMark_model.105569_t
Valid prediction for GeneMark_model.105553_t
Valid prediction for GeneMark_model.105526_t
Valid prediction for GeneMark_model.105567_t
Valid prediction for GeneMark_model.105529_t
Valid prediction for GeneMark_model.105580_t
Valid prediction for GlimmerHMM_glimmerT_60597-T1
Valid prediction for snap_scaffold_28-snap.1726-T1
Valid prediction for GlimmerHMM_glimmerT_60600-T1
Valid prediction for GeneMark_model.105561_t
Valid prediction for snap_scaffold_28-snap.1774-T1
Valid prediction for GlimmerHMM_glimmerT_60587-T1
Valid prediction for snap_scaffold_28-snap.1722-T1
Valid prediction for GeneMark_model.105497_t
Valid prediction for snap_scaffold_28-snap.1747-T1
Valid prediction for snap_scaffold_28-snap.1749-T1
Valid prediction for snap_scaffold_28-snap.1760-T1
Valid prediction for pasa_asmbl_38397.p2
Valid prediction for GeneMark_model.105516_t
Valid prediction for Augustus_model.g40346.t1
Valid prediction for CodingQuarry_transcript_43622-T1
Valid prediction for snap_scaffold_28-snap.1724-T1
Valid prediction for snap_scaffold_28-snap.1727-T1
Valid prediction for snap_scaffold_28-snap.1720-T1
Valid prediction for GlimmerHMM_glimmerT_60590-T1
Valid prediction for snap_scaffold_28-snap.1732-T1
Valid prediction for GeneMark_model.105559_t
Valid prediction for snap_scaffold_28-snap.1768-T1
Valid prediction for GeneMark_model.105555_t
Valid prediction for GlimmerHMM_glimmerT_60585-T1
Valid prediction for GeneMark_model.105576_t
Valid prediction for pasa_asmbl_38508.p1
Valid prediction for GeneMark_model.105521_t
Valid prediction for snap_scaffold_28-snap.1759-T1
Valid prediction for GeneMark_model.105540_t
Valid prediction for snap_scaffold_28-snap.1761-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.1766-T1
Valid prediction for GeneMark_model.105501_t
Valid prediction for GlimmerHMM_glimmerT_60594-T1
Valid prediction for snap_scaffold_28-snap.1730-T1
Valid prediction for GlimmerHMM_glimmerT_60621-T1
Valid prediction for GeneMark_model.105571_t
Valid prediction for GlimmerHMM_glimmerT_60592-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_28-snap.1775-T1
Valid prediction for snap_scaffold_28-snap.1744-T1
Valid prediction for snap_scaffold_28-snap.1778-T1
Valid prediction for GeneMark_model.105573_t
Valid prediction for snap_scaffold_28-snap.1751-T1
Valid prediction for pasa_asmbl_37743.p1
Valid prediction for GlimmerHMM_glimmerT_60610-T1
Valid prediction for GeneMark_model.105502_t
Valid prediction for snap_scaffold_28-snap.1777-T1
Valid prediction for GeneMark_model.105517_t
Valid prediction for GeneMark_model.105527_t
Valid prediction for GeneMark_model.105530_t
Valid prediction for GeneMark_model.105494_t
Valid prediction for HiQ_model.g40361.t1
Valid prediction for GeneMark_model.105547_t
Valid prediction for GlimmerHMM_glimmerT_60606-T1
Valid prediction for GlimmerHMM_glimmerT_60588-T1
Valid prediction for GeneMark_model.105541_t
Valid prediction for GeneMark_model.105534_t
Valid prediction for GeneMark_model.105536_t
Valid prediction for GeneMark_model.105566_t
Valid prediction for GeneMark_model.105543_t
Valid prediction for snap_scaffold_28-snap.1738-T1
Valid prediction for GeneMark_model.105528_t
Valid prediction for Augustus_model.g40360.t1
Valid prediction for snap_scaffold_28-snap.1772-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 7764, 7952
Sorry, prediction pasa_asmbl_37750.p1 fails validation.
(ATG)	 AG	4026-4062	GT	AGG
(GAG)	 AG	6593-6698	GT	AGG
(CGC)	 AG	6937-7072	GT	AAG
(GAC)	 AG	7281-7526	GT	TGG
(GTG)	 AG	7764-7952	AG	AGA
-recovered pasa_asmbl_37750.p1, initial, 4026, 4062
-recovered pasa_asmbl_37750.p1, internal, 4026, 4062
-recovered pasa_asmbl_37750.p1, internal, 6593, 6698
-recovered pasa_asmbl_37750.p1, internal, 6937, 7072
-recovered pasa_asmbl_37750.p1, internal, 7281, 7526
Valid prediction for snap_scaffold_28-snap.1745-T1
Valid prediction for snap_scaffold_28-snap.1741-T1
Valid prediction for GeneMark_model.105552_t
Valid prediction for Augustus_model.g40358.t1
Valid prediction for Augustus_model.g40357.t1
Valid prediction for GeneMark_model.105513_t
Valid prediction for GeneMark_model.105520_t
Valid prediction for snap_scaffold_28-snap.1762-T1
Valid prediction for GeneMark_model.105579_t
Valid prediction for GeneMark_model.105570_t
Valid prediction for GeneMark_model.105522_t
Valid prediction for Augustus_model.g40352.t1
Valid prediction for GeneMark_model.105515_t
Valid prediction for pasa_asmbl_37738.p1
Valid prediction for snap_scaffold_28-snap.1770-T1
Valid prediction for snap_scaffold_28-snap.1750-T1
Valid prediction for GeneMark_model.105493_t
Valid prediction for GlimmerHMM_glimmerT_60620-T1
Valid prediction for snap_scaffold_28-snap.1717-T1
Valid prediction for GlimmerHMM_glimmerT_60598-T1
Valid prediction for snap_scaffold_28-snap.1758-T1
Valid prediction for snap_scaffold_28-snap.1725-T1
Valid prediction for GeneMark_model.105509_t
Valid prediction for GeneMark_model.105519_t
Valid prediction for snap_scaffold_28-snap.1719-T1
Valid prediction for GlimmerHMM_glimmerT_60596-T1
Valid prediction for GeneMark_model.105537_t
Valid prediction for GeneMark_model.105560_t
Valid prediction for GeneMark_model.105498_t
Valid prediction for GeneMark_model.105558_t
Couldn't classify 7941, 7954
Couldn't classify 21177, 21331
Sorry, prediction pasa_asmbl_37749.p1 fails validation.
(CGC)	 AC	7941-7954	GT	AGG
(CAT)	 AG	8041-8262	GT	AGG
(GCC)	 AG	8746-8866	GT	AGG
(GTG)	 AG	9037-9132	GT	AGG
(CAA)	 AG	9362-9477	GT	AAG
(GTA)	 AG	11926-12091	GT	AGG
(GTT)	 AG	12235-12333	GT	AGG
(GAC)	 AG	12806-13065	GT	TCG
(TGG)	 AG	14448-14658	GT	TGG
(CTT)	 AG	15957-15986	GT	CGG
(ATG)	 AG	16320-16457	GT	CAG
(GTG)	 AG	16786-16931	GT	AGG
(TTT)	 AG	17123-17252	GT	AGG
(GTG)	 AG	20193-20277	GT	GGG
(ATC)	 AG	20751-20837	GT	AGG
(ATG)	 AG	21177-21331	GT	CGG
-recovered pasa_asmbl_37749.p1, initial, 16320, 16457
add_exon() Sorry, pasa_asmbl_37749.p1 21177-21331-initial-1 is invalid.
-recovered pasa_asmbl_37749.p1, initial, 21177, 21331
-recovered pasa_asmbl_37749.p1, internal, 8041, 8262
-recovered pasa_asmbl_37749.p1, internal, 8746, 8866
-recovered pasa_asmbl_37749.p1, internal, 9037, 9132
-recovered pasa_asmbl_37749.p1, internal, 9362, 9477
-recovered pasa_asmbl_37749.p1, internal, 11926, 12091
-recovered pasa_asmbl_37749.p1, internal, 12235, 12333
-recovered pasa_asmbl_37749.p1, internal, 12806, 13065
-recovered pasa_asmbl_37749.p1, internal, 14448, 14658
-recovered pasa_asmbl_37749.p1, internal, 15957, 15986
-recovered pasa_asmbl_37749.p1, internal, 16320, 16457
-recovered pasa_asmbl_37749.p1, internal, 16786, 16931
-recovered pasa_asmbl_37749.p1, internal, 17123, 17252
-recovered pasa_asmbl_37749.p1, internal, 20193, 20277
-recovered pasa_asmbl_37749.p1, internal, 20751, 20837
-recovered pasa_asmbl_37749.p1, internal, 21177, 21331
Valid prediction for GlimmerHMM_glimmerT_60614-T1
Valid prediction for GeneMark_model.105551_t
Valid prediction for GeneMark_model.105539_t
Valid prediction for Augustus_model.g40353.t1
Valid prediction for snap_scaffold_28-snap.1733-T1
Valid prediction for snap_scaffold_28-snap.1737-T1
Valid prediction for GeneMark_model.105500_t
Valid prediction for snap_scaffold_28-snap.1721-T1
Valid prediction for snap_scaffold_28-snap.1748-T1
Valid prediction for GeneMark_model.105496_t
Valid prediction for snap_scaffold_28-snap.1752-T1
Valid prediction for GeneMark_model.105549_t
Valid prediction for snap_scaffold_28-snap.1723-T1
Valid prediction for GlimmerHMM_glimmerT_60607-T1
Valid prediction for GlimmerHMM_glimmerT_60624-T1
Valid prediction for GeneMark_model.105562_t
Valid prediction for snap_scaffold_28-snap.1743-T1
Valid prediction for GeneMark_model.105506_t
Valid prediction for GlimmerHMM_glimmerT_60593-T1
Valid prediction for GlimmerHMM_glimmerT_60611-T1
Valid prediction for GeneMark_model.105575_t
Valid prediction for snap_scaffold_28-snap.1736-T1
Valid prediction for GlimmerHMM_glimmerT_60608-T1
Valid prediction for GlimmerHMM_glimmerT_60618-T1
Valid prediction for GeneMark_model.105554_t
Valid prediction for GeneMark_model.105545_t
Valid prediction for snap_scaffold_28-snap.1728-T1
Valid prediction for GeneMark_model.105488_t
Valid prediction for GlimmerHMM_glimmerT_60589-T1
Valid prediction for Augustus_model.g40359.t1
Valid prediction for GlimmerHMM_glimmerT_60622-T1
Valid prediction for snap_scaffold_28-snap.1734-T1
Valid prediction for snap_scaffold_28-snap.1754-T1
Valid prediction for GlimmerHMM_glimmerT_60584-T1
Valid prediction for snap_scaffold_28-snap.1718-T1
Valid prediction for Augustus_model.g40355.t1
Valid prediction for snap_scaffold_28-snap.1765-T1
Valid prediction for GeneMark_model.105511_t
Valid prediction for HiQ_model.g40356.t1
Valid prediction for GeneMark_model.105518_t
Valid prediction for GeneMark_model.105532_t
Valid prediction for snap_scaffold_28-snap.1731-T1
Valid prediction for GlimmerHMM_glimmerT_60586-T1
Valid prediction for snap_scaffold_28-snap.1742-T1
Valid prediction for GeneMark_model.105556_t
Valid prediction for GlimmerHMM_glimmerT_60603-T1
Valid prediction for CodingQuarry_transcript_43626-T1
Valid prediction for GeneMark_model.105489_t
Valid prediction for GlimmerHMM_glimmerT_60613-T1
Valid prediction for GeneMark_model.105486_t
Valid prediction for CodingQuarry_transcript_43625-T1
Valid prediction for snap_scaffold_28-snap.1746-T1
Couldn't classify 78763, 79036
Sorry, prediction pasa_asmbl_37744.p1 fails validation.
(CTC)	 CT	78763-79036	GT	CGG
(GGA)	 AG	80043-80185	CT	AAC
-recovered pasa_asmbl_37744.p1, terminal, 80043, 80185
Valid prediction for GeneMark_model.105568_t
Valid prediction for GeneMark_model.105491_t
Valid prediction for snap_scaffold_28-snap.1739-T1
Valid prediction for snap_scaffold_28-snap.1756-T1
Valid prediction for GeneMark_model.105524_t
Valid prediction for GeneMark_model.105577_t
Valid prediction for snap_scaffold_28-snap.1757-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10724, rend_intergenic: 2556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16733, rend_intergenic: 13525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17515, rend_intergenic: 17210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25037, rend_intergenic: 17883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33164, rend_intergenic: 27046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54986, rend_intergenic: 34414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55986, rend_intergenic: 55082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57677, rend_intergenic: 56608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61667, rend_intergenic: 61457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63328, rend_intergenic: 61944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66189, rend_intergenic: 63439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67855, rend_intergenic: 66351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89810, rend_intergenic: 68734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104267, rend_intergenic: 90841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124826, rend_intergenic: 104405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128556, rend_intergenic: 125638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132123, rend_intergenic: 129319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146834, rend_intergenic: 134552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150027, rend_intergenic: 147159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154072, rend_intergenic: 152382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168929, rend_intergenic: 164361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179300, rend_intergenic: 173849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182575, rend_intergenic: 179302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221532, rend_intergenic: 187186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228252, rend_intergenic: 222289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237350, rend_intergenic: 228919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242559, rend_intergenic: 241888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258343, rend_intergenic: 243830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263628, rend_intergenic: 261394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 71267, rend_intergenic: 71264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 267653
-exon list size: 1497


building trellis

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5.9    
6.0    
6.1    
6.1    
6.2    
6.3    
6.3    
6.4    
6.5    
6.5    
6.6    
6.7    
6.7    
6.8    
6.9    
6.9    
7.0    
7.1    
7.1    
7.2    
7.3    
7.3    
7.4    
7.5    
7.5    
7.6    
7.7    
7.7    
7.8    
7.9    
7.9    
8.0    
8.1    
8.1    
8.2    
8.3    
8.3    
8.4    
8.5    
8.5    
8.6    
8.7    
8.7    
8.8    
8.9    
8.9    
9.0    
9.1    
9.1    
9.2    
9.3    
9.3    
9.4    
9.5    
9.5    
9.6    
9.7    
9.7    
9.8    
9.9    
9.9    
10.0    
10.1    
10.1    
10.2    
10.3    
10.3    
10.4    
10.5    
10.5    
10.6    
10.7    
10.7    
10.8    
10.9    
10.9    
11.0    
11.1    
11.1    
11.2    
11.3    
11.3    
11.4    
11.5    
11.5    
11.6    
11.7    
11.7    
11.8    
11.9    
11.9    
12.0    
12.1    
12.1    
12.2    
12.3    
12.3    
12.4    
12.5    
12.5    
12.6    
12.7    
12.7    
12.8    
12.9    
12.9    
13.0    
13.1    
13.1    
13.2    
13.3    
13.3    
13.4    
13.5    
13.5    
13.6    
13.7    
13.7    
13.8    
13.9    
13.9    
14.0    
14.1    
14.1    
14.2    
14.3    
14.3    
14.4    
14.5    
14.5    
14.6    
14.7    
14.7    
14.8    
14.9    
14.9    
15.0    
15.1    
15.1    
15.2    
15.3    
15.3    
15.4    
15.5    
15.5    
15.6    
15.7    
15.7    
15.8    
15.9    
15.9    
16.0    
16.1    
16.1    
16.2    
16.3    
16.3    
16.4    
16.5    
16.5    
16.6    
16.7    
16.7    
16.8    
16.9    
16.9    
17.0    
17.1    
17.1    
17.2    
17.3    
17.3    
17.4    
17.5    
17.5    
17.6    
17.7    
17.7    
17.8    
17.9    
17.9    
18.0    
18.1    
18.1    
18.2    
18.3    
18.3    
18.4    
18.5    
18.5    
18.6    
18.7    
18.7    
18.8    
18.9    
18.9    
19.0    
19.1    
19.1    
19.2    
19.3    
19.3    
19.4    
19.5    
19.5    
19.6    
19.7    
19.7    
19.8    
19.9    
19.9    
20.0    
20.1    
20.1    
20.2    
20.3    
20.3    
20.4    
20.5    
20.5    
20.6    
20.7    
20.7    
20.8    
20.9    
20.9    
21.0    
21.1    
21.1    
21.2    
21.3    
21.3    
21.4    
21.5    
21.5    
21.6    
21.7    
21.7    
21.8    
21.9    
21.9    
22.0    
22.1    
22.1    
22.2    
22.3    
22.3    
22.4    
22.5    
22.5    
22.6    
22.7    
22.7    
22.8    
22.9    
22.9    
23.0    
23.1    
23.1    
23.2    
23.3    
23.3    
23.4    
23.5    
23.5    
23.6    
23.7    
23.7    
23.8    
23.9    
23.9    
24.0    
24.1    
24.1    
24.2    
24.3    
24.3    
24.4    
24.5    
24.5    
24.6    
24.7    
24.7    
24.8    
24.9    
24.9    
25.0    
25.1    
25.2    
25.2    
25.3    
25.4    
25.4    
25.5    
25.6    
25.6    
25.7    
25.8    
25.8    
25.9    
26.0    
26.0    
26.1    
26.2    
26.2    
26.3    
26.4    
26.4    
26.5    
26.6    
26.6    
26.7    
26.8    
26.8    
26.9    
27.0    
27.0    
27.1    
27.2    
27.2    
27.3    
27.4    
27.4    
27.5    
27.6    
27.6    
27.7    
27.8    
27.8    
27.9    
28.0    
28.0    
28.1    
28.2    
28.2    
28.3    
28.4    
28.4    
28.5    
28.6    
28.6    
28.7    
28.8    
28.8    
28.9    
29.0    
29.0    
29.1    
29.2    
29.2    
29.3    
29.4    
29.4    
29.5    
29.6    
29.6    
29.7    
29.8    
29.8    
29.9    
30.0    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.4    
30.5    
30.6    
30.6    
30.7    
30.8    
30.8    
30.9    
31.0    
31.0    
31.1    
31.2    
31.2    
31.3    
31.4    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.8    
31.9    
32.0    
32.0    
32.1    
32.2    
32.2    
32.3    
32.4    
32.4    
32.5    
32.6    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.0    
33.1    
33.2    
33.2    
33.3    
33.4    
33.4    
33.5    
33.6    
33.6    
33.7    
33.8    
33.8    
33.9    
34.0    
34.0    
34.1    
34.2    
34.2    
34.3    
34.4    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.2    
35.3    
35.4    
35.4    
35.5    
35.6    
35.6    
35.7    
35.8    
35.8    
35.9    
36.0    
36.0    
36.1    
36.2    
36.2    
36.3    
36.4    
36.4    
36.5    
36.6    
36.6    
36.7    
36.8    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.4    
37.5    
37.6    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.0    
38.1    
38.2    
38.2    
38.3    
38.4    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.2    
39.3    
39.4    
39.4    
39.5    
39.6    
39.6    
39.7    
39.8    
39.8    
39.9    
40.0    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.4    
40.5    
40.6    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.0    
41.1    
41.2    
41.2    
41.3    
41.4    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.4    
42.5    
42.6    
42.6    
42.7    
42.8    
42.8    
42.9    
43.0    
43.0    
43.1    
43.2    
43.2    
43.3    
43.4    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.8    
43.9    
44.0    
44.0    
44.1    
44.2    
44.2    
44.3    
44.4    
44.4    
44.5    
44.6    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.6    
45.7    
45.8    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.6    
46.7    
46.8    
46.8    
46.9    
47.0    
47.0    
47.1    
47.2    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.6    
47.7    
47.8    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.6    
49.7    
49.8    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.2    
50.3    
50.4    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.2    
52.3    
52.4    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.8    
52.9    
53.0    
53.0    
53.1    
53.2    
53.2    
53.3    
53.4    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.2    
54.3    
54.4    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.4    
55.5    
55.6    
55.6    
55.7    
55.8    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.6    
56.7    
56.8    
56.8    
56.9    
57.0    
57.0    
57.1    
57.2    
57.2    
57.3    
57.4    
57.4    
57.5    
57.6    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.4    
59.5    
59.6    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.0    
60.1    
60.2    
60.2    
60.3    
60.4    
60.4    
60.5    
60.6    
60.6    
60.7    
60.8    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.2    
63.3    
63.4    
63.4    
63.5    
63.6    
63.6    
63.7    
63.8    
63.8    
63.9    
64.0    
64.0    
64.1    
64.2    
64.2    
64.3    
64.4    
64.4    
64.5    
64.6    
64.6    
64.7    
64.8    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.6    
65.7    
65.8    
65.8    
65.9    
66.0    
66.0    
66.1    
66.2    
66.2    
66.3    
66.4    
66.4    
66.5    
66.6    
66.6    
66.7    
66.8    
66.8    
66.9    
67.0    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.2    
69.3    
69.4    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.4    
70.5    
70.6    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.6    
72.7    
72.8    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.2    
73.3    
73.4    
73.4    
73.5    
73.6    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.0    
74.1    
74.2    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.8    
74.9    
75.0    
75.1    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.5    
75.6    
75.7    
75.7    
75.8    
75.9    
75.9    
76.0    
76.1    
76.1    
76.2    
76.3    
76.3    
76.4    
76.5    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.7    
77.8    
77.9    
77.9    
78.0    
78.1    
78.1    
78.2    
78.3    
78.3    
78.4    
78.5    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.7    
79.8    
79.9    
79.9    
80.0    
80.1    
80.1    
80.2    
80.3    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.7    
80.8    
80.9    
80.9    
81.0    
81.1    
81.1    
81.2    
81.3    
81.3    
81.4    
81.5    
81.5    
81.6    
81.7    
81.7    
81.8    
81.9    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.3    
82.4    
82.5    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.3    
85.4    
85.5    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.3    
86.4    
86.5    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.3    
87.4    
87.5    
87.5    
87.6    
87.7    
87.7    
87.8    
87.9    
87.9    
88.0    
88.1    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.5    
88.6    
88.7    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.7    
90.8    
90.9    
90.9    
91.0    
91.1    
91.1    
91.2    
91.3    
91.3    
91.4    
91.5    
91.5    
91.6    
91.7    
91.7    
91.8    
91.9    
91.9    
92.0    
92.1    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.1    
95.2    
95.3    
95.3    
95.4    
95.5    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.7    
96.8    
96.9    
96.9    
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99.9    
-found 58 predictions from path traversal
Error with prediction: snap lend_intergenic: 10724, rend_intergenic: 2556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16733, rend_intergenic: 13525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17515, rend_intergenic: 17210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25037, rend_intergenic: 17883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33164, rend_intergenic: 27046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54986, rend_intergenic: 34414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55986, rend_intergenic: 55082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57677, rend_intergenic: 56608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61667, rend_intergenic: 61457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63328, rend_intergenic: 61944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66189, rend_intergenic: 63439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67855, rend_intergenic: 66351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89810, rend_intergenic: 68734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104267, rend_intergenic: 90841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124826, rend_intergenic: 104405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128556, rend_intergenic: 125638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132123, rend_intergenic: 129319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146834, rend_intergenic: 134552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150027, rend_intergenic: 147159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154072, rend_intergenic: 152382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168929, rend_intergenic: 164361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179300, rend_intergenic: 173849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182575, rend_intergenic: 179302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221532, rend_intergenic: 187186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228252, rend_intergenic: 222289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237350, rend_intergenic: 228919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242559, rend_intergenic: 241888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258343, rend_intergenic: 243830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263628, rend_intergenic: 261394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 71267, rend_intergenic: 71264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support