-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_7006659-7233515 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60509-T1 Valid prediction for GlimmerHMM_glimmerT_60504-T1 Valid prediction for snap_scaffold_28-snap.1615-T1 Valid prediction for GeneMark_model.105332_t Valid prediction for snap_scaffold_28-snap.1607-T1 Valid prediction for snap_scaffold_28-snap.1617-T1 Valid prediction for GeneMark_model.105290_t Valid prediction for snap_scaffold_28-snap.1600-T1 Valid prediction for GeneMark_model.105313_t Valid prediction for snap_scaffold_28-snap.1629-T1 Valid prediction for GeneMark_model.105299_t Valid prediction for GeneMark_model.105295_t Valid prediction for GeneMark_model.105305_t Valid prediction for snap_scaffold_28-snap.1605-T1 Valid prediction for snap_scaffold_28-snap.1603-T1 Valid prediction for snap_scaffold_28-snap.1623-T1 Valid prediction for GeneMark_model.105351_t Valid prediction for GeneMark_model.105298_t Valid prediction for snap_scaffold_28-snap.1613-T1 Valid prediction for snap_scaffold_28-snap.1581-T1 Valid prediction for GeneMark_model.105304_t Valid prediction for snap_scaffold_28-snap.1593-T1 Valid prediction for GeneMark_model.105347_t Valid prediction for GeneMark_model.105308_t Valid prediction for GeneMark_model.105284_t Valid prediction for GlimmerHMM_glimmerT_60496-T1 Valid prediction for GeneMark_model.105288_t Valid prediction for snap_scaffold_28-snap.1618-T1 Valid prediction for GlimmerHMM_glimmerT_60498-T1 Valid prediction for snap_scaffold_28-snap.1620-T1 Valid prediction for GeneMark_model.105292_t Valid prediction for snap_scaffold_28-snap.1612-T1 Valid prediction for GeneMark_model.105324_t Valid prediction for snap_scaffold_28-snap.1598-T1 Valid prediction for GlimmerHMM_glimmerT_60513-T1 Valid prediction for snap_scaffold_28-snap.1582-T1 Valid prediction for snap_scaffold_28-snap.1586-T1 Valid prediction for snap_scaffold_28-snap.1610-T1 Valid prediction for snap_scaffold_28-snap.1578-T1 Valid prediction for GeneMark_model.105303_t Valid prediction for GlimmerHMM_glimmerT_60528-T1 Valid prediction for GlimmerHMM_glimmerT_60494-T1 Valid prediction for GeneMark_model.105358_t Valid prediction for snap_scaffold_28-snap.1595-T1 Valid prediction for GlimmerHMM_glimmerT_60501-T1 Valid prediction for GlimmerHMM_glimmerT_60495-T1 Valid prediction for GeneMark_model.105342_t Valid prediction for GeneMark_model.105338_t Valid prediction for GeneMark_model.105306_t Valid prediction for snap_scaffold_28-snap.1580-T1 Valid prediction for snap_scaffold_28-snap.1627-T1 Valid prediction for GeneMark_model.105362_t Valid prediction for GeneMark_model.105326_t Valid prediction for GeneMark_model.105286_t Valid prediction for GlimmerHMM_glimmerT_60527-T1 Valid prediction for HiQ_model.g40291.t1 Valid prediction for snap_scaffold_28-snap.1579-T1 Valid prediction for GeneMark_model.105364_t Valid prediction for snap_scaffold_28-snap.1583-T1 Valid prediction for snap_scaffold_28-snap.1590-T1 Couldn't classify 218774, 218890 Sorry, prediction pasa_asmbl_38335.p1 fails validation. (TCT) TG 218774-218890 GT AGG (GCA) AG 219113-219178 GT AGG (GAA) AG 219298-219425 GT AGG (CGA) AG 219546-219732 GT GGG (GAG) AG 219831-219947 GT GGG (CAC) AG 220099-220273 GT CGG (GTT) AG 220425-220618 GT AGG (GAG) AG 221512-221638 GT CAG (CTT) AG 221792-221859 GT AGG (GTC) AG 222042-222179 GT AGG (ACG) AG 222692-222829 GT AGG (AAC) AG 223100-223268 GT GCG (GCC) AG 224091-224284 CC GAC -recovered pasa_asmbl_38335.p1, terminal, 224091, 224284 -recovered pasa_asmbl_38335.p1, internal, 219113, 219178 -recovered pasa_asmbl_38335.p1, internal, 219298, 219425 -recovered pasa_asmbl_38335.p1, internal, 219546, 219732 -recovered pasa_asmbl_38335.p1, internal, 219831, 219947 -recovered pasa_asmbl_38335.p1, internal, 220099, 220273 -recovered pasa_asmbl_38335.p1, internal, 220425, 220618 -recovered pasa_asmbl_38335.p1, internal, 221512, 221638 -recovered pasa_asmbl_38335.p1, internal, 221792, 221859 -recovered pasa_asmbl_38335.p1, internal, 222042, 222179 -recovered pasa_asmbl_38335.p1, internal, 222692, 222829 -recovered pasa_asmbl_38335.p1, internal, 223100, 223268 Valid prediction for HiQ_model.g40296.t1 Valid prediction for snap_scaffold_28-snap.1608-T1 Valid prediction for GeneMark_model.105344_t Valid prediction for GeneMark_model.105315_t Valid prediction for GeneMark_model.105368_t Valid prediction for snap_scaffold_28-snap.1616-T1 Valid prediction for GlimmerHMM_glimmerT_60529-T1 Valid prediction for GeneMark_model.105365_t Valid prediction for GeneMark_model.105301_t Valid prediction for GeneMark_model.105328_t Valid prediction for snap_scaffold_28-snap.1584-T1 Valid prediction for GeneMark_model.105340_t Valid prediction for GeneMark_model.105336_t Valid prediction for GeneMark_model.105317_t Valid prediction for GlimmerHMM_glimmerT_60500-T1 Valid prediction for Augustus_model.g40295.t1 Valid prediction for GlimmerHMM_glimmerT_60511-T1 Valid prediction for GlimmerHMM_glimmerT_60519-T1 Valid prediction for GeneMark_model.105310_t Valid prediction for GeneMark_model.105302_t Valid prediction for pasa_asmbl_38332.p2 Valid prediction for GeneMark_model.105363_t Valid prediction for GeneMark_model.105349_t Valid prediction for snap_scaffold_28-snap.1588-T1 Valid prediction for GlimmerHMM_glimmerT_60506-T1 Valid prediction for snap_scaffold_28-snap.1604-T1 Valid prediction for Augustus_model.g40289.t1 Valid prediction for GeneMark_model.105322_t Valid prediction for GeneMark_model.105330_t Valid prediction for GlimmerHMM_glimmerT_60518-T1 Valid prediction for GeneMark_model.105289_t Valid prediction for snap_scaffold_28-snap.1592-T1 Valid prediction for GeneMark_model.105346_t Valid prediction for snap_scaffold_28-snap.1609-T1 Valid prediction for snap_scaffold_28-snap.1624-T1 Valid prediction for GlimmerHMM_glimmerT_60521-T1 Valid prediction for snap_scaffold_28-snap.1630-T1 Valid prediction for GeneMark_model.105366_t Valid prediction for GlimmerHMM_glimmerT_60515-T1 Valid prediction for Augustus_model.g40279.t1 Valid prediction for GeneMark_model.105296_t Valid prediction for GlimmerHMM_glimmerT_60517-T1 Valid prediction for GeneMark_model.105319_t Valid prediction for Augustus_model.g40283.t1 Valid prediction for GeneMark_model.105353_t Valid prediction for snap_scaffold_28-snap.1626-T1 Valid prediction for GeneMark_model.105355_t Valid prediction for GeneMark_model.105333_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_28-snap.1585-T1 Couldn't classify 62315, 62563 Sorry, prediction pasa_asmbl_37704.p1 fails validation. (GCC) CC 62315-62563 GT AGG (GTT) AG 62703-62910 GT AGG (GCG) AG 63343-63566 GT AGG (ATT) AG 63828-63973 GT AGG (AAC) AG 65072-65175 GT AGG (TTC) AG 65368-65491 GT AGG (GTG) AG 66251-66441 GT CAG (ACG) AG 66561-66707 GT AGG (GCC) AG 66909-67028 GT AGG (GAG) AG 67323-67478 GT CAG (GCG) AG 67587-67690 GT AGG (GGG) AG 67804-68025 GT ATG (GTG) AG 68298-68464 GT AGG (CTG) AG 68759-68954 GT AGG (GCT) AG 70961-71183 GT AGG (GCT) AG 71940-72076 GG AGG -recovered pasa_asmbl_37704.p1, terminal, 71940, 72076 -recovered pasa_asmbl_37704.p1, internal, 62703, 62910 -recovered pasa_asmbl_37704.p1, internal, 63343, 63566 -recovered pasa_asmbl_37704.p1, internal, 63828, 63973 -recovered pasa_asmbl_37704.p1, internal, 65072, 65175 -recovered pasa_asmbl_37704.p1, internal, 65368, 65491 -recovered pasa_asmbl_37704.p1, internal, 66251, 66441 -recovered pasa_asmbl_37704.p1, internal, 66561, 66707 -recovered pasa_asmbl_37704.p1, internal, 66909, 67028 -recovered pasa_asmbl_37704.p1, internal, 67323, 67478 -recovered pasa_asmbl_37704.p1, internal, 67587, 67690 -recovered pasa_asmbl_37704.p1, internal, 67804, 68025 -recovered pasa_asmbl_37704.p1, internal, 68298, 68464 -recovered pasa_asmbl_37704.p1, internal, 68759, 68954 -recovered pasa_asmbl_37704.p1, internal, 70961, 71183 Valid prediction for snap_scaffold_28-snap.1622-T1 Valid prediction for GeneMark_model.105323_t Valid prediction for GeneMark_model.105329_t Valid prediction for GeneMark_model.105348_t Valid prediction for GeneMark_model.105331_t Valid prediction for Augustus_model.g40285.t1 Valid prediction for GeneMark_model.105311_t Valid prediction for GeneMark_model.105356_t Valid prediction for GlimmerHMM_glimmerT_60493-T1 Valid prediction for snap_scaffold_28-snap.1599-T1 Valid prediction for GlimmerHMM_glimmerT_60523-T1 Valid prediction for GeneMark_model.105334_t Valid prediction for snap_scaffold_28-snap.1631-T1 Valid prediction for GeneMark_model.105287_t Valid prediction for snap_scaffold_28-snap.1606-T1 Valid prediction for GeneMark_model.105297_t Valid prediction for GlimmerHMM_glimmerT_60503-T1 Valid prediction for GlimmerHMM_glimmerT_60507-T1 Valid prediction for GlimmerHMM_glimmerT_60524-T1 Valid prediction for GlimmerHMM_glimmerT_60510-T1 Valid prediction for GlimmerHMM_glimmerT_60526-T1 Valid prediction for Augustus_model.g40293.t1 Valid prediction for GeneMark_model.105325_t Valid prediction for snap_scaffold_28-snap.1614-T1 Valid prediction for GeneMark_model.105341_t Couldn't classify 51011, 51092 Couldn't classify 51833, 51881 Sorry, prediction pasa_asmbl_37888.p2 fails validation. (GCA) AC 51011-51092 GT AGG (GTT) AG 51439-51628 GT AGG (TAG) AG 51833-51881 AA AGA -recovered pasa_asmbl_37888.p2, internal, 51439, 51628 Valid prediction for GeneMark_model.105354_t Valid prediction for GeneMark_model.105339_t Valid prediction for GeneMark_model.105316_t Couldn't classify 61185, 61735 Sorry, prediction pasa_asmbl_37706.p1 fails validation. (ATG) GC 59860-59933 GT GAG (CTC) AG 60197-60402 GT AGG (GTG) AG 60615-60794 GT AGG (GAG) AG 61185-61735 TC GCT -recovered pasa_asmbl_37706.p1, initial, 59860, 59933 add_exon() Sorry, pasa_asmbl_37706.p1 60197-60402-terminal-2 is invalid. -recovered pasa_asmbl_37706.p1, terminal, 60197, 60402 add_exon() Sorry, pasa_asmbl_37706.p1 60615-60794-terminal-1 is invalid. -recovered pasa_asmbl_37706.p1, terminal, 60615, 60794 -recovered pasa_asmbl_37706.p1, internal, 60197, 60402 -recovered pasa_asmbl_37706.p1, internal, 60615, 60794 Valid prediction for snap_scaffold_28-snap.1596-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_28-snap.1601-T1 Valid prediction for GeneMark_model.105361_t Couldn't classify 40676, 40697 Couldn't classify 41312, 41343 Sorry, prediction pasa_asmbl_37711.p2 fails validation. (AGC) CC 40676-40697 GT GAG (TTC) AG 40831-40944 GT GGG (GCG) AG 41070-41210 GT AGG (AGG) AG 41312-41343 CA ACC -recovered pasa_asmbl_37711.p2, internal, 40831, 40944 -recovered pasa_asmbl_37711.p2, internal, 41070, 41210 Valid prediction for Augustus_model.g40281.t1 Valid prediction for snap_scaffold_28-snap.1611-T1 Valid prediction for GeneMark_model.105321_t Valid prediction for GlimmerHMM_glimmerT_60516-T1 Couldn't classify 61868, 62260 Sorry, prediction pasa_asmbl_37705.p1 fails validation. (CAG) CC 61868-62260 CA GCC Valid prediction for GeneMark_model.105343_t Valid prediction for GlimmerHMM_glimmerT_60508-T1 Valid prediction for GeneMark_model.105318_t Valid prediction for GlimmerHMM_glimmerT_60502-T1 Valid prediction for GeneMark_model.105327_t Valid prediction for Augustus_model.g40294.t1 Valid prediction for GeneMark_model.105345_t Valid prediction for GeneMark_model.105335_t Valid prediction for GeneMark_model.105357_t Couldn't classify 38371, 38390 Couldn't classify 39825, 39962 Sorry, prediction pasa_asmbl_37916.p2 fails validation. (GGT) CT 38371-38390 GT AGG (GGG) AG 39164-39302 GT AGG (GTG) AG 39825-39962 CA GCC -recovered pasa_asmbl_37916.p2, internal, 39164, 39302 Valid prediction for GeneMark_model.105337_t Valid prediction for GeneMark_model.105350_t Valid prediction for GeneMark_model.105307_t Valid prediction for Augustus_model.g40288.t1 Valid prediction for Augustus_model.g40292.t1 Valid prediction for GlimmerHMM_glimmerT_60512-T1 Valid prediction for Augustus_model.g40280.t1 Valid prediction for GlimmerHMM_glimmerT_60525-T1 Valid prediction for snap_scaffold_28-snap.1619-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for snap_scaffold_28-snap.1621-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_60520-T1 Couldn't classify 55829, 55864 Couldn't classify 60197, 60344 Sorry, prediction pasa_asmbl_37707.p1 fails validation. (GGG) CG 55829-55864 GT AGG (AAC) AG 55959-56196 GT ACG (AGT) AG 56969-57105 GT GGG (GAG) AG 57217-57343 GT AGG (GCA) AG 57436-57573 GT AGG (GTT) AG 57874-58010 GT CTG (GTG) AG 58577-58737 GT AGG (AGA) AG 59018-59199 GT CAG (ATG) AG 59315-59520 GT AGG (AAC) AG 59803-59933 GT GAG (CTC) AG 60197-60344 AC CCA add_exon() Sorry, pasa_asmbl_37707.p1 59315-59520-initial-1 is invalid. -recovered pasa_asmbl_37707.p1, initial, 59315, 59520 add_exon() Sorry, pasa_asmbl_37707.p1 57217-57343-terminal-3 is invalid. -recovered pasa_asmbl_37707.p1, terminal, 57217, 57343 -recovered pasa_asmbl_37707.p1, internal, 55959, 56196 -recovered pasa_asmbl_37707.p1, internal, 56969, 57105 -recovered pasa_asmbl_37707.p1, internal, 57217, 57343 -recovered pasa_asmbl_37707.p1, internal, 57436, 57573 -recovered pasa_asmbl_37707.p1, internal, 57874, 58010 -recovered pasa_asmbl_37707.p1, internal, 58577, 58737 -recovered pasa_asmbl_37707.p1, internal, 59018, 59199 -recovered pasa_asmbl_37707.p1, internal, 59315, 59520 -recovered pasa_asmbl_37707.p1, internal, 59803, 59933 Valid prediction for GeneMark_model.105293_t Valid prediction for GlimmerHMM_glimmerT_60505-T1 Valid prediction for GeneMark_model.105312_t Valid prediction for GlimmerHMM_glimmerT_60522-T1 Valid prediction for Augustus_model.g40278.t1 Valid prediction for Augustus_model.g40287.t1 Valid prediction for GeneMark_model.105367_t Valid prediction for GeneMark_model.105359_t Valid prediction for snap_scaffold_28-snap.1625-T1 Valid prediction for Augustus_model.g40290.t1 Valid prediction for Augustus_model.g40282.t1 Valid prediction for snap_scaffold_28-snap.1587-T1 Valid prediction for GeneMark_model.105300_t Valid prediction for GeneMark_model.105320_t Valid prediction for snap_scaffold_28-snap.1591-T1 Couldn't classify 42984, 43018 Sorry, prediction pasa_asmbl_37709.p1 fails validation. (AAC) AA 42984-43018 GT AGG (ACT) AG 43225-43345 GT CTG (GTG) AG 43684-43812 GT AGG (GAG) AG 44437-44561 GT AGG (GCT) AG 44870-45023 GT AGG (ACT) AG 45191-45294 GT AGG (TTT) AG 45479-45683 GT AGG (TTG) AG 45806-45925 GT AGG (GTG) AG 46151-46255 GT AGG (GAG) AG 46424-46591 CG GAC -recovered pasa_asmbl_37709.p1, terminal, 46424, 46591 -recovered pasa_asmbl_37709.p1, internal, 43225, 43345 -recovered pasa_asmbl_37709.p1, internal, 43684, 43812 -recovered pasa_asmbl_37709.p1, internal, 44437, 44561 -recovered pasa_asmbl_37709.p1, internal, 44870, 45023 -recovered pasa_asmbl_37709.p1, internal, 45191, 45294 -recovered pasa_asmbl_37709.p1, internal, 45479, 45683 -recovered pasa_asmbl_37709.p1, internal, 45806, 45925 -recovered pasa_asmbl_37709.p1, internal, 46151, 46255 Valid prediction for Augustus_model.g40284.t1 Valid prediction for GeneMark_model.105309_t Valid prediction for GeneMark_model.105352_t Valid prediction for Augustus_model.g40286.t1 Valid prediction for GeneMark_model.105285_t Valid prediction for GeneMark_model.105291_t Valid prediction for GlimmerHMM_glimmerT_60514-T1 Valid prediction for GeneMark_model.105360_t Valid prediction for GlimmerHMM_glimmerT_60499-T1 Valid prediction for GlimmerHMM_glimmerT_60497-T1 Valid prediction for snap_scaffold_28-snap.1602-T1 Valid prediction for snap_scaffold_28-snap.1597-T1 Valid prediction for snap_scaffold_28-snap.1628-T1 Valid prediction for snap_scaffold_28-snap.1594-T1 Valid prediction for snap_scaffold_28-snap.1589-T1 Valid prediction for GeneMark_model.105314_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 40805, rend_intergenic: 37582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43747, rend_intergenic: 42279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 45442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52223, rend_intergenic: 49757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54844, rend_intergenic: 52237 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62099, rend_intergenic: 55951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66667, rend_intergenic: 62497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85532, rend_intergenic: 67970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96016, rend_intergenic: 90140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103975, rend_intergenic: 100786 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 104520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113625, rend_intergenic: 110260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122565, rend_intergenic: 114866 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127057, rend_intergenic: 124798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141764, rend_intergenic: 127526 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163453, rend_intergenic: 154782 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184186, rend_intergenic: 165882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190637, rend_intergenic: 186115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206603, rend_intergenic: 201855 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207874, rend_intergenic: 206676 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210973, rend_intergenic: 208976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216815, rend_intergenic: 213988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224284, rend_intergenic: 221951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 226857 -exon list size: 1222 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.4 1.5 1.6 1.6 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.9 2.9 3.0 3.1 3.2 3.3 3.3 3.4 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.1 5.1 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 6.0 6.0 6.1 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.9 6.9 7.0 7.1 7.2 7.3 7.4 7.4 7.5 7.6 7.7 7.8 7.8 7.9 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.7 8.7 8.8 8.9 9.0 9.1 9.2 9.2 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.8 11.8 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.7 12.7 12.8 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 14.0 14.1 14.1 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.7 15.8 15.8 15.9 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 18.0 18.1 18.1 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.3 19.4 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.1 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.7 25.7 25.8 25.9 26.0 26.1 26.1 26.2 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.3 28.3 28.4 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.6 30.6 30.7 30.8 30.9 31.0 31.0 31.1 31.2 31.3 31.4 31.5 31.5 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.3 32.4 32.4 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.6 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.8 36.8 36.9 37.0 37.1 37.2 37.3 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.2 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.5 39.5 39.6 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.4 40.4 40.5 40.6 40.7 40.8 40.8 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.2 42.2 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.8 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.5 46.6 46.7 46.7 46.8 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.5 47.5 47.6 47.7 47.8 47.9 48.0 48.0 48.1 48.2 48.3 48.4 48.4 48.5 48.6 48.7 48.8 48.9 48.9 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.1 51.1 51.2 51.3 51.4 51.5 51.6 51.6 51.7 51.8 51.9 52.0 52.0 52.1 52.2 52.3 52.4 52.5 52.5 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.2 53.3 53.3 53.4 53.5 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.2 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.8 57.8 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.2 59.2 59.3 59.4 59.5 59.6 59.6 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.4 60.5 60.5 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.8 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.7 62.8 62.9 63.0 63.1 63.2 63.2 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.4 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.6 67.6 67.7 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.5 68.5 68.6 68.7 68.8 68.9 69.0 69.0 69.1 69.2 69.3 69.4 69.4 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.6 71.7 71.7 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.8 73.9 73.9 74.0 74.1 74.2 74.3 74.3 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.5 75.6 75.7 75.7 75.8 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 77.9 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.6 80.7 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.9 81.9 82.0 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.1 84.2 84.2 84.3 84.4 84.5 84.6 84.6 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.9 85.9 86.0 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.2 87.3 87.3 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.2 88.2 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.8 90.8 90.9 91.0 91.1 91.2 91.3 91.3 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.1 92.2 92.2 92.3 92.4 92.5 92.6 92.6 92.7 92.8 92.9 93.0 93.1 93.1 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.9 94.0 94.0 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.9 94.9 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.6 96.7 96.7 96.8 96.9 97.0 97.1 97.1 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.4 98.4 98.5 98.6 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.7 99.8 99.8 99.9 -found 52 predictions from path traversal Error with prediction: snap lend_intergenic: 40805, rend_intergenic: 37582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43747, rend_intergenic: 42279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 45442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52223, rend_intergenic: 49757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54844, rend_intergenic: 52237 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62099, rend_intergenic: 55951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66667, rend_intergenic: 62497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85532, rend_intergenic: 67970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96016, rend_intergenic: 90140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103975, rend_intergenic: 100786 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 104520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113625, rend_intergenic: 110260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122565, rend_intergenic: 114866 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127057, rend_intergenic: 124798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141764, rend_intergenic: 127526 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163453, rend_intergenic: 154782 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184186, rend_intergenic: 165882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190637, rend_intergenic: 186115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206603, rend_intergenic: 201855 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207874, rend_intergenic: 206676 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210973, rend_intergenic: 208976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216815, rend_intergenic: 213988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224284, rend_intergenic: 221951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 15 predictions persist after filtering for low support