-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_2915158-3128745 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39844.t1 Valid prediction for CodingQuarry_transcript_43495-T1 Valid prediction for GeneMark_model.104397_t Valid prediction for snap_scaffold_28-snap.731-T1 Valid prediction for Augustus_model.g39832.t1 Valid prediction for snap_scaffold_28-snap.747-T1 Valid prediction for GlimmerHMM_glimmerT_59854-T1 Valid prediction for GlimmerHMM_glimmerT_59881-T1 Valid prediction for GeneMark_model.104417_t Valid prediction for snap_scaffold_28-snap.755-T1 Valid prediction for GlimmerHMM_glimmerT_59859-T1 Valid prediction for GlimmerHMM_glimmerT_59857-T1 Valid prediction for GlimmerHMM_glimmerT_59863-T1 Valid prediction for snap_scaffold_28-snap.749-T1 Couldn't classify 172657, 172666 Sorry, prediction pasa_asmbl_38129.p1 fails validation. (ACA) CC 172657-172666 GT GGG (GGT) AG 172881-173140 GT AGG (ATT) AG 173262-173346 GT AGG (AAC) AG 173469-173530 AA AGA -recovered pasa_asmbl_38129.p1, terminal, 173469, 173530 -recovered pasa_asmbl_38129.p1, internal, 172881, 173140 -recovered pasa_asmbl_38129.p1, internal, 173262, 173346 Valid prediction for GlimmerHMM_glimmerT_59883-T1 Valid prediction for GeneMark_model.104406_t Valid prediction for snap_scaffold_28-snap.746-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_59861-T1 Valid prediction for GeneMark_model.104386_t Valid prediction for HiQ_model.g39837.t1 Valid prediction for GeneMark_model.104422_t Valid prediction for GeneMark_model.104404_t Valid prediction for snap_scaffold_28-snap.733-T1 Valid prediction for snap_scaffold_28-snap.745-T1 Valid prediction for GeneMark_model.104433_t Valid prediction for snap_scaffold_28-snap.768-T1 Valid prediction for GeneMark_model.104420_t Valid prediction for GeneMark_model.104374_t Valid prediction for GlimmerHMM_glimmerT_59885-T1 Valid prediction for CodingQuarry_transcript_43502-T1 Valid prediction for snap_scaffold_28-snap.753-T1 Valid prediction for CodingQuarry_transcript_43493-T1 Valid prediction for Augustus_model.g39846.t1 Valid prediction for GlimmerHMM_glimmerT_59869-T1 Valid prediction for GlimmerHMM_glimmerT_59864-T1 Valid prediction for GlimmerHMM_glimmerT_59874-T1 Valid prediction for GeneMark_model.104425_t Valid prediction for GeneMark_model.104414_t Valid prediction for Augustus_model.g39839.t1 Valid prediction for GeneMark_model.104376_t Valid prediction for GeneMark_model.104378_t Valid prediction for GlimmerHMM_glimmerT_59841-T1 Couldn't classify 191768, 191897 Couldn't classify 193907, 193928 Sorry, prediction pasa_asmbl_38130.p1 fails validation. (GAG) AG 191768-191897 GT CGG (AGA) AG 191987-192054 GT AGG (GTG) AG 192209-192322 GT AGG (GAT) AG 192452-192564 GT AGG (GCT) AG 193259-193333 GT AGG (TGT) AG 193441-193545 GT GGG (TGG) AG 193663-193731 GT AGG (GTT) AG 193907-193928 CA AGC -recovered pasa_asmbl_38130.p1, internal, 191768, 191897 -recovered pasa_asmbl_38130.p1, internal, 191987, 192054 -recovered pasa_asmbl_38130.p1, internal, 192209, 192322 -recovered pasa_asmbl_38130.p1, internal, 192452, 192564 -recovered pasa_asmbl_38130.p1, internal, 193259, 193333 -recovered pasa_asmbl_38130.p1, internal, 193441, 193545 -recovered pasa_asmbl_38130.p1, internal, 193663, 193731 Valid prediction for pasa_asmbl_38121.p1 Valid prediction for GeneMark_model.104401_t Valid prediction for Augustus_model.g39843.t1 Valid prediction for GlimmerHMM_glimmerT_59878-T1 Valid prediction for GeneMark_model.104392_t Couldn't classify 171202, 171426 Couldn't classify 171597, 171692 Sorry, prediction pasa_asmbl_38539.p1 fails validation. (GGC) CG 171202-171426 GT AGG (GCG) AG 171597-171692 GG AGG Valid prediction for GlimmerHMM_glimmerT_59880-T1 Valid prediction for GlimmerHMM_glimmerT_59875-T1 Valid prediction for snap_scaffold_28-snap.766-T1 Valid prediction for GlimmerHMM_glimmerT_59871-T1 Valid prediction for GeneMark_model.104427_t Valid prediction for GeneMark_model.104424_t Valid prediction for pasa_asmbl_38117.p1 Valid prediction for Augustus_model.g39860.t1 Valid prediction for Augustus_model.g39855.t1 Valid prediction for GeneMark_model.104410_t Valid prediction for Augustus_model.g39859.t1 Valid prediction for snap_scaffold_28-snap.760-T1 Valid prediction for GeneMark_model.104429_t Valid prediction for GeneMark_model.104419_t Valid prediction for GlimmerHMM_glimmerT_59866-T1 Valid prediction for GeneMark_model.104395_t Valid prediction for snap_scaffold_28-snap.773-T1 Valid prediction for snap_scaffold_28-snap.754-T1 Valid prediction for snap_scaffold_28-snap.728-T1 Valid prediction for snap_scaffold_28-snap.737-T1 Valid prediction for snap_scaffold_28-snap.770-T1 Valid prediction for Augustus_model.g39863.t1 Couldn't classify 194971, 195083 Sorry, prediction pasa_asmbl_38131.p1 fails validation. (AAG) CG 194971-195083 GT AGG (GAA) AG 195226-195447 GT AGG (GCC) AG 195646-195733 GT AGG (AGC) AG 195812-195906 GT GGG (ATA) AG 196343-196517 TG GAT -recovered pasa_asmbl_38131.p1, terminal, 196343, 196517 -recovered pasa_asmbl_38131.p1, internal, 195226, 195447 -recovered pasa_asmbl_38131.p1, internal, 195646, 195733 -recovered pasa_asmbl_38131.p1, internal, 195812, 195906 Valid prediction for GlimmerHMM_glimmerT_59870-T1 Valid prediction for GeneMark_model.104389_t Valid prediction for snap_scaffold_28-snap.765-T1 Valid prediction for snap_scaffold_28-snap.762-T1 Couldn't classify 12659, 12762 Sorry, prediction pasa_asmbl_38119.p1 fails validation. (TAC) GT 12659-12762 GT AGG (GGC) AG 13648-13786 GT AGG (GAA) AG 14123-14260 GG AAG -recovered pasa_asmbl_38119.p1, terminal, 14123, 14260 -recovered pasa_asmbl_38119.p1, internal, 13648, 13786 Valid prediction for snap_scaffold_28-snap.725-T1 Valid prediction for snap_scaffold_28-snap.743-T1 Valid prediction for snap_scaffold_28-snap.724-T1 Valid prediction for HiQ_model.g39833.t1 Valid prediction for GlimmerHMM_glimmerT_59856-T1 Valid prediction for GlimmerHMM_glimmerT_59876-T1 Valid prediction for GlimmerHMM_glimmerT_59877-T1 Valid prediction for GlimmerHMM_glimmerT_59872-T1 Valid prediction for GeneMark_model.104431_t Valid prediction for GeneMark_model.104402_t Valid prediction for Augustus_model.g39857.t1 Valid prediction for Augustus_model.g39849.t1 Valid prediction for GeneMark_model.104408_t Valid prediction for snap_scaffold_28-snap.761-T1 Valid prediction for snap_scaffold_28-snap.740-T1 Valid prediction for GlimmerHMM_glimmerT_59847-T1 Valid prediction for GeneMark_model.104380_t Valid prediction for GlimmerHMM_glimmerT_59845-T1 Valid prediction for GeneMark_model.104390_t Valid prediction for snap_scaffold_28-snap.752-T1 Valid prediction for Augustus_model.g39845.t1 Valid prediction for snap_scaffold_28-snap.777-T1 Valid prediction for GeneMark_model.104388_t Valid prediction for pasa_asmbl_38127.p1 Valid prediction for snap_scaffold_28-snap.736-T1 Valid prediction for snap_scaffold_28-snap.757-T1 Valid prediction for GlimmerHMM_glimmerT_59840-T1 Valid prediction for HiQ_model.g39834.t1 Valid prediction for snap_scaffold_28-snap.742-T1 Valid prediction for GeneMark_model.104412_t Valid prediction for CodingQuarry_transcript_43500-T1 Valid prediction for GlimmerHMM_glimmerT_59842-T1 Valid prediction for snap_scaffold_28-snap.727-T1 Valid prediction for GlimmerHMM_glimmerT_59858-T1 Valid prediction for snap_scaffold_28-snap.739-T1 Valid prediction for Augustus_model.g39858.t1 Valid prediction for Augustus_model.g39856.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_28-snap.776-T1 Valid prediction for GeneMark_model.104411_t Valid prediction for Augustus_model.g39854.t1 Valid prediction for snap_scaffold_28-snap.764-T1 Valid prediction for Augustus_model.g39848.t1 Valid prediction for Augustus_model.g39847.t1 Valid prediction for GeneMark_model.104418_t Valid prediction for GlimmerHMM_glimmerT_59865-T1 Valid prediction for snap_scaffold_28-snap.774-T1 Valid prediction for Augustus_model.g39842.t1 Valid prediction for snap_scaffold_28-snap.730-T1 Couldn't classify 177274, 177297 Sorry, prediction pasa_asmbl_37440.p2 fails validation. (ATG) CC 176123-176327 GT AGG (GGG) AG 176891-176989 GT TGG (GCG) AG 177096-177166 GT TGG (TCG) AG 177274-177297 AC ACA -recovered pasa_asmbl_37440.p2, initial, 176123, 176327 -recovered pasa_asmbl_37440.p2, internal, 176891, 176989 -recovered pasa_asmbl_37440.p2, internal, 177096, 177166 Valid prediction for snap_scaffold_28-snap.750-T1 Valid prediction for GeneMark_model.104393_t Valid prediction for GeneMark_model.104398_t Valid prediction for snap_scaffold_28-snap.734-T1 Valid prediction for GeneMark_model.104391_t Valid prediction for CodingQuarry_transcript_43503-T1 Valid prediction for GlimmerHMM_glimmerT_59853-T1 Valid prediction for snap_scaffold_28-snap.759-T1 Valid prediction for snap_scaffold_28-snap.775-T1 Valid prediction for snap_scaffold_28-snap.778-T1 Valid prediction for snap_scaffold_28-snap.767-T1 Valid prediction for GeneMark_model.104400_t Valid prediction for GeneMark_model.104413_t Valid prediction for GlimmerHMM_glimmerT_59846-T1 Valid prediction for GeneMark_model.104382_t Valid prediction for GeneMark_model.104381_t Couldn't classify 11520, 11606 Sorry, prediction pasa_asmbl_37457.p1 fails validation. (ATG) CT 10507-10743 GT TGG (GTG) AG 10977-11132 GT AAG (ATG) AG 11255-11326 GT AGG (ATG) AG 11520-11606 TA GGT -recovered pasa_asmbl_37457.p1, initial, 10507, 10743 -recovered pasa_asmbl_37457.p1, initial, 11255, 11326 -recovered pasa_asmbl_37457.p1, internal, 10977, 11132 -recovered pasa_asmbl_37457.p1, internal, 11255, 11326 Valid prediction for GeneMark_model.104407_t Valid prediction for Augustus_model.g39841.t1 Valid prediction for snap_scaffold_28-snap.758-T1 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 174331, 174681 Couldn't classify 175592, 175631 Sorry, prediction pasa_asmbl_37441.p1 fails validation. (ACC) GG 174331-174681 GT AGG (GAG) AG 174825-174973 GT AGG (TGG) AG 175134-175226 GT CGG (GGT) AG 175592-175631 AG CGA -recovered pasa_asmbl_37441.p1, internal, 174825, 174973 -recovered pasa_asmbl_37441.p1, internal, 175134, 175226 Valid prediction for GeneMark_model.104415_t Valid prediction for GlimmerHMM_glimmerT_59867-T1 Couldn't classify 12215, 12232 Sorry, prediction pasa_asmbl_37456.p1 fails validation. (ACC) AG 12215-12232 GT AGG (AAG) AG 12473-12589 GT AGG (TTG) AG 12750-12893 GT AGG (TGT) AG 13103-13205 GT CAG (GTA) AG 13383-13405 CA AAC -recovered pasa_asmbl_37456.p1, terminal, 13383, 13405 -recovered pasa_asmbl_37456.p1, internal, 12215, 12232 -recovered pasa_asmbl_37456.p1, internal, 12473, 12589 -recovered pasa_asmbl_37456.p1, internal, 12750, 12893 -recovered pasa_asmbl_37456.p1, internal, 13103, 13205 Valid prediction for GeneMark_model.104426_t Valid prediction for GeneMark_model.104428_t Valid prediction for GlimmerHMM_glimmerT_59855-T1 Valid prediction for GlimmerHMM_glimmerT_59843-T1 Valid prediction for GlimmerHMM_glimmerT_59848-T1 Valid prediction for HiQ_model.g39836.t1 Valid prediction for GeneMark_model.104387_t Valid prediction for GlimmerHMM_glimmerT_59851-T1 Valid prediction for snap_scaffold_28-snap.763-T1 Valid prediction for Augustus_model.g39851.t1 Valid prediction for GeneMark_model.104421_t Valid prediction for snap_scaffold_28-snap.729-T1 Valid prediction for GlimmerHMM_glimmerT_59850-T1 Valid prediction for GeneMark_model.104409_t Couldn't classify 177566, 177613 Sorry, prediction pasa_asmbl_37900.p1 fails validation. (TAC) TC 177566-177613 GT AGG (GTG) AG 177689-177921 GT AGG (GTT) AG 178045-178156 GT AGG (GTG) AG 178283-178389 GT AGG (GGT) AG 178559-178747 GT AGG (ACT) AG 179067-179191 GT GGG (GTG) AG 179376-179492 GT AGG (TGA) AG 179818-179990 GT AGG (ACG) AG 180104-180218 GT AGG (GTG) AG 180417-180554 GT CTG (TCC) AG 180742-180836 GT AGG (GTG) AG 181049-181122 GT AAG (ACT) AG 181391-181488 GT ATG (TCC) AG 181626-181702 AC GAA add_exon() Sorry, pasa_asmbl_37900.p1 177689-177921-terminal-2 is invalid. -recovered pasa_asmbl_37900.p1, terminal, 177689, 177921 -recovered pasa_asmbl_37900.p1, terminal, 181626, 181702 -recovered pasa_asmbl_37900.p1, internal, 177689, 177921 -recovered pasa_asmbl_37900.p1, internal, 178045, 178156 -recovered pasa_asmbl_37900.p1, internal, 178283, 178389 -recovered pasa_asmbl_37900.p1, internal, 178559, 178747 -recovered pasa_asmbl_37900.p1, internal, 179067, 179191 -recovered pasa_asmbl_37900.p1, internal, 179376, 179492 -recovered pasa_asmbl_37900.p1, internal, 179818, 179990 -recovered pasa_asmbl_37900.p1, internal, 180104, 180218 -recovered pasa_asmbl_37900.p1, internal, 180417, 180554 -recovered pasa_asmbl_37900.p1, internal, 180742, 180836 -recovered pasa_asmbl_37900.p1, internal, 181049, 181122 -recovered pasa_asmbl_37900.p1, internal, 181391, 181488 Valid prediction for Augustus_model.g39853.t1 Valid prediction for GeneMark_model.104394_t Valid prediction for Augustus_model.g39852.t1 Valid prediction for Augustus_model.g39861.t1 Valid prediction for snap_scaffold_28-snap.726-T1 Valid prediction for snap_scaffold_28-snap.756-T1 Valid prediction for Augustus_model.g39850.t1 Valid prediction for GeneMark_model.104432_t Couldn't classify 187574, 187627 Sorry, prediction pasa_asmbl_37436.p1 fails validation. (GTC) AC 187574-187627 GT GGG (CCA) AG 187825-187992 GT AGG (GAG) AG 188110-188241 AC GAA -recovered pasa_asmbl_37436.p1, terminal, 188110, 188241 -recovered pasa_asmbl_37436.p1, internal, 187825, 187992 Couldn't classify 121381, 121498 Sorry, prediction pasa_asmbl_37447.p1 fails validation. (ATG) TC 116255-116281 GT AGG (TTC) AG 117174-117273 GT CGG (GGG) AG 117408-117494 GT AGG (AGA) AG 119625-119748 GT TGG (CTT) AG 120467-120601 GT GGG (TTT) AG 121381-121498 GT GGG -recovered pasa_asmbl_37447.p1, initial, 116255, 116281 -recovered pasa_asmbl_37447.p1, internal, 117174, 117273 -recovered pasa_asmbl_37447.p1, internal, 117408, 117494 -recovered pasa_asmbl_37447.p1, internal, 119625, 119748 -recovered pasa_asmbl_37447.p1, internal, 120467, 120601 -recovered pasa_asmbl_37447.p1, internal, 121381, 121498 Valid prediction for GlimmerHMM_glimmerT_59862-T1 Valid prediction for CodingQuarry_transcript_43497-T1 Valid prediction for snap_scaffold_28-snap.772-T1 Valid prediction for GlimmerHMM_glimmerT_59873-T1 Valid prediction for GeneMark_model.104396_t Valid prediction for pasa_asmbl_37431.p1 Valid prediction for HiQ_model.g39835.t1 Valid prediction for GeneMark_model.104383_t Couldn't classify 190796, 190877 Sorry, prediction pasa_asmbl_37435.p1 fails validation. (AGT) AA 190796-190877 GT AGG (GTG) AG 191618-191784 GT AGG (AGC) AG 191934-192062 GT AGG (GAA) AG 192220-192336 GT AGG (CTG) AG 192479-192626 GT TGG (CTC) AG 193053-193228 GT CGG (GGA) AG 193430-193559 GT CGG (GCC) AG 193730-193800 GT AGG (GTG) AG 193940-194094 GT AGG (GCG) AG 194377-194461 AG GAA -recovered pasa_asmbl_37435.p1, terminal, 194377, 194461 -recovered pasa_asmbl_37435.p1, internal, 191618, 191784 -recovered pasa_asmbl_37435.p1, internal, 191934, 192062 -recovered pasa_asmbl_37435.p1, internal, 192220, 192336 -recovered pasa_asmbl_37435.p1, internal, 192479, 192626 -recovered pasa_asmbl_37435.p1, internal, 193053, 193228 -recovered pasa_asmbl_37435.p1, internal, 193430, 193559 -recovered pasa_asmbl_37435.p1, internal, 193730, 193800 -recovered pasa_asmbl_37435.p1, internal, 193940, 194094 Valid prediction for GeneMark_model.104403_t Valid prediction for GeneMark_model.104430_t Valid prediction for GeneMark_model.104385_t Valid prediction for snap_scaffold_28-snap.738-T1 Valid prediction for GlimmerHMM_glimmerT_59852-T1 Valid prediction for snap_scaffold_28-snap.744-T1 Valid prediction for GeneMark_model.104423_t Valid prediction for CodingQuarry_transcript_43496-T1 Valid prediction for CodingQuarry_transcript_43494-T1 Valid prediction for GeneMark_model.104379_t Valid prediction for GlimmerHMM_glimmerT_59844-T1 Valid prediction for snap_scaffold_28-snap.769-T1 Valid prediction for GlimmerHMM_glimmerT_59860-T1 Valid prediction for GlimmerHMM_glimmerT_59882-T1 Valid prediction for GeneMark_model.104416_t Valid prediction for GeneMark_model.104384_t Valid prediction for GlimmerHMM_glimmerT_59879-T1 Valid prediction for GlimmerHMM_glimmerT_59849-T1 Valid prediction for snap_scaffold_28-snap.751-T1 Valid prediction for GeneMark_model.104405_t Valid prediction for GeneMark_model.104375_t Valid prediction for HiQ_model.g39838.t1 Valid prediction for snap_scaffold_28-snap.741-T1 Valid prediction for CodingQuarry_transcript_43498-T1 Valid prediction for HiQ_model.g39862.t1 Valid prediction for GlimmerHMM_glimmerT_59868-T1 Couldn't classify 85543, 85659 Couldn't classify 87092, 87181 Sorry, prediction pasa_asmbl_37907.p1 fails validation. (GGA) AG 85543-85659 GT AGG (GAC) AG 85776-85917 GT TGG (GCT) AG 86528-86634 GT CGG (AGT) AG 87092-87181 CA CAC -recovered pasa_asmbl_37907.p1, internal, 85543, 85659 -recovered pasa_asmbl_37907.p1, internal, 85776, 85917 -recovered pasa_asmbl_37907.p1, internal, 86528, 86634 Valid prediction for snap_scaffold_28-snap.771-T1 Valid prediction for GlimmerHMM_glimmerT_59884-T1 Valid prediction for HiQ_model.g39840.t1 Valid prediction for GeneMark_model.104377_t Valid prediction for snap_scaffold_28-snap.732-T1 Valid prediction for snap_scaffold_28-snap.748-T1 Valid prediction for pasa_asmbl_37438.p1 Valid prediction for snap_scaffold_28-snap.735-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6670, rend_intergenic: 5877 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7640, rend_intergenic: 6801 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40236, rend_intergenic: 33807 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44563, rend_intergenic: 41073 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49819, rend_intergenic: 45349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58616, rend_intergenic: 50342 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61348, rend_intergenic: 60309 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81835, rend_intergenic: 79362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84798, rend_intergenic: 82183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100636, rend_intergenic: 85584 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107719, rend_intergenic: 104183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116113, rend_intergenic: 110693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139485, rend_intergenic: 124810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149723, rend_intergenic: 145277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161733, rend_intergenic: 158045 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173530, rend_intergenic: 164745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187755, rend_intergenic: 176795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196560, rend_intergenic: 190986 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212327, rend_intergenic: 204725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 213588 -exon list size: 1002 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 43 predictions from path traversal Error with prediction: snap lend_intergenic: 6670, rend_intergenic: 5877 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7640, rend_intergenic: 6801 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40236, rend_intergenic: 33807 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44563, rend_intergenic: 41073 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49819, rend_intergenic: 45349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58616, rend_intergenic: 50342 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61348, rend_intergenic: 60309 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81835, rend_intergenic: 79362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84798, rend_intergenic: 82183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100636, rend_intergenic: 85584 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107719, rend_intergenic: 104183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116113, rend_intergenic: 110693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139485, rend_intergenic: 124810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149723, rend_intergenic: 145277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161733, rend_intergenic: 158045 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173530, rend_intergenic: 164745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187755, rend_intergenic: 176795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196560, rend_intergenic: 190986 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212327, rend_intergenic: 204725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 36 predictions persist after filtering for low support