-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_2246320-2452616

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59748-T1
Valid prediction for GeneMark_model.104228_t
Valid prediction for CodingQuarry_transcript_43472-T1
Valid prediction for HiQ_model.g39740.t1
Valid prediction for snap_scaffold_28-snap.578-T1
Valid prediction for Augustus_model.g39762.t1
Couldn't classify 185140, 185697
Sorry, prediction pasa_asmbl_38064.p1 fails validation.
(CCC)	 GG	185140-185697	TA	AAT
Valid prediction for GlimmerHMM_glimmerT_59741-T1
Valid prediction for CodingQuarry_transcript_43470-T1
Valid prediction for GlimmerHMM_glimmerT_59706-T1
Valid prediction for Augustus_model.g39761.t1
Valid prediction for GeneMark_model.104200_t
Valid prediction for pasa_asmbl_38524.p1
Valid prediction for GeneMark_model.104183_t
Valid prediction for Augustus_model.g39758.t1
Valid prediction for CodingQuarry_transcript_43462-T1
Valid prediction for GeneMark_model.104215_t
Valid prediction for snap_scaffold_28-snap.571-T1
Valid prediction for snap_scaffold_28-snap.581-T1
Valid prediction for pasa_asmbl_38057.p1
Valid prediction for GeneMark_model.104223_t
Valid prediction for GlimmerHMM_glimmerT_59720-T1
Valid prediction for snap_scaffold_28-snap.600-T1
Valid prediction for snap_scaffold_28-snap.593-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.562-T1
Valid prediction for GeneMark_model.104206_t
Valid prediction for Augustus_model.g39766.t1
Valid prediction for HiQ_model.g39737.t1
Valid prediction for snap_scaffold_28-snap.552-T1
Valid prediction for GeneMark_model.104210_t
Valid prediction for snap_scaffold_28-snap.572-T1
Valid prediction for GeneMark_model.104201_t
Valid prediction for GeneMark_model.104227_t
Valid prediction for pasa_asmbl_38054.p1
Valid prediction for GlimmerHMM_glimmerT_59730-T1
Valid prediction for CodingQuarry_transcript_43468-T1
Valid prediction for GeneMark_model.104217_t
Valid prediction for GeneMark_model.104197_t
Valid prediction for snap_scaffold_28-snap.595-T1
Valid prediction for HiQ_model.g39763.t1
Valid prediction for GeneMark_model.104209_t
Valid prediction for GeneMark_model.104225_t
Valid prediction for Augustus_model.g39745.t1
Valid prediction for GeneMark_model.104219_t
Valid prediction for Augustus_model.g39760.t1
Valid prediction for Augustus_model.g39743.t1
Valid prediction for GeneMark_model.104195_t
Valid prediction for GlimmerHMM_glimmerT_59746-T1
Valid prediction for Augustus_model.g39755.t1
Valid prediction for GeneMark_model.104187_t
Valid prediction for snap_scaffold_28-snap.589-T1
Valid prediction for snap_scaffold_28-snap.594-T1
Valid prediction for HiQ_model.g39749.t1
Valid prediction for GlimmerHMM_glimmerT_59704-T1
Valid prediction for GlimmerHMM_glimmerT_59750-T1
Valid prediction for CodingQuarry_transcript_43471-T1
Valid prediction for GlimmerHMM_glimmerT_59714-T1
Valid prediction for snap_scaffold_28-snap.583-T1
Valid prediction for GlimmerHMM_glimmerT_59737-T1
Valid prediction for snap_scaffold_28-snap.555-T1
Couldn't classify 183385, 183422
Couldn't classify 184098, 184863
Sorry, prediction pasa_asmbl_38063.p1 fails validation.
(CAA)	 GG	183385-183422	GT	AGG
(GCC)	 AG	184098-184863	GA	AGG
Valid prediction for snap_scaffold_28-snap.590-T1
Valid prediction for GlimmerHMM_glimmerT_59738-T1
Valid prediction for GlimmerHMM_glimmerT_59723-T1
Valid prediction for GlimmerHMM_glimmerT_59708-T1
Valid prediction for GeneMark_model.104193_t
Valid prediction for GlimmerHMM_glimmerT_59710-T1
Valid prediction for GeneMark_model.104212_t
Couldn't classify 27278, 27911
Sorry, prediction pasa_asmbl_38052.p1 fails validation.
(TCA)	 TC	27278-27911	GT	AGG
(ACC)	 AG	28033-28178	GT	AGG
(TTC)	 AG	28327-28432	GT	AGG
(GTG)	 AG	28540-28716	GT	AGG
(GTT)	 AG	28936-29195	AA	GAA
-recovered pasa_asmbl_38052.p1, terminal, 28936, 29195
-recovered pasa_asmbl_38052.p1, internal, 28033, 28178
-recovered pasa_asmbl_38052.p1, internal, 28327, 28432
-recovered pasa_asmbl_38052.p1, internal, 28540, 28716
Valid prediction for GlimmerHMM_glimmerT_59735-T1
Valid prediction for snap_scaffold_28-snap.569-T1
Valid prediction for Augustus_model.g39751.t1
Valid prediction for GeneMark_model.104213_t
Valid prediction for GeneMark_model.104221_t
Valid prediction for Augustus_model.g39768.t1
Valid prediction for snap_scaffold_28-snap.584-T1
Valid prediction for GlimmerHMM_glimmerT_59749-T1
Valid prediction for GlimmerHMM_glimmerT_59711-T1
Valid prediction for Augustus_model.g39742.t1
Valid prediction for snap_scaffold_28-snap.588-T1
Valid prediction for snap_scaffold_28-snap.598-T1
Valid prediction for GlimmerHMM_glimmerT_59739-T1
Valid prediction for GeneMark_model.104204_t
Valid prediction for GeneMark_model.104185_t
Valid prediction for GlimmerHMM_glimmerT_59722-T1
Valid prediction for snap_scaffold_28-snap.570-T1
Sorry, intron length (5) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59731-T1
Couldn't classify 152807, 152816
Sorry, prediction pasa_asmbl_37357.p1 fails validation.
(ATC)	 TC	152807-152816	GT	AGG
(TGG)	 AG	152933-153099	GT	AAG
(ATT)	 AG	153194-153344	GT	AGG
(ATG)	 AG	153440-153626	GT	GAG
(TTA)	 AG	153742-153962	GT	AGG
(GTG)	 AG	154534-154688	GT	AGG
(GAC)	 AG	154929-155091	GT	CAG
(TAA)	 AG	155260-155387	CA	GAC
add_exon() Sorry, pasa_asmbl_37357.p1 153440-153626-initial-1 is invalid.
-recovered pasa_asmbl_37357.p1, initial, 153440, 153626
-recovered pasa_asmbl_37357.p1, terminal, 155260, 155387
-recovered pasa_asmbl_37357.p1, internal, 152933, 153099
-recovered pasa_asmbl_37357.p1, internal, 153194, 153344
-recovered pasa_asmbl_37357.p1, internal, 153440, 153626
-recovered pasa_asmbl_37357.p1, internal, 153742, 153962
-recovered pasa_asmbl_37357.p1, internal, 154534, 154688
-recovered pasa_asmbl_37357.p1, internal, 154929, 155091
Valid prediction for GeneMark_model.104226_t
Valid prediction for GeneMark_model.104207_t
Valid prediction for GeneMark_model.104188_t
Valid prediction for GeneMark_model.104211_t
Valid prediction for snap_scaffold_28-snap.553-T1
Valid prediction for snap_scaffold_28-snap.596-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_43465-T1
Valid prediction for GlimmerHMM_glimmerT_59703-T1
Valid prediction for GeneMark_model.104198_t
Valid prediction for GeneMark_model.104216_t
Valid prediction for GeneMark_model.104205_t
Valid prediction for pasa_asmbl_37346.p1
Valid prediction for GlimmerHMM_glimmerT_59747-T1
Valid prediction for HiQ_model.g39753.t1
Valid prediction for snap_scaffold_28-snap.561-T1
Valid prediction for CodingQuarry_transcript_43467-T1
Valid prediction for snap_scaffold_28-snap.580-T1
Valid prediction for snap_scaffold_28-snap.558-T1
Valid prediction for Augustus_model.g39748.t1
Valid prediction for GeneMark_model.104203_t
Valid prediction for GlimmerHMM_glimmerT_59740-T1
Valid prediction for GeneMark_model.104218_t
Valid prediction for pasa_asmbl_37372.p1
Valid prediction for GlimmerHMM_glimmerT_59744-T1
Valid prediction for GlimmerHMM_glimmerT_59712-T1
Valid prediction for GlimmerHMM_glimmerT_59713-T1
Valid prediction for Augustus_model.g39759.t1
Valid prediction for snap_scaffold_28-snap.585-T1
Valid prediction for pasa_asmbl_37354.p1
Valid prediction for GlimmerHMM_glimmerT_59733-T1
Valid prediction for snap_scaffold_28-snap.559-T1
Valid prediction for snap_scaffold_28-snap.566-T1
Valid prediction for Augustus_model.g39744.t1
Valid prediction for GeneMark_model.104196_t
Valid prediction for snap_scaffold_28-snap.575-T1
Couldn't classify 115783, 115921
Sorry, prediction pasa_asmbl_37365.p2 fails validation.
(GGC)	 AC	115783-115921	GT	AGG
(GTT)	 AG	116086-116294	CC	GAC
-recovered pasa_asmbl_37365.p2, terminal, 116086, 116294
Valid prediction for HiQ_model.g39754.t1
Couldn't classify 14731, 14816
Couldn't classify 20107, 20221
Sorry, prediction pasa_asmbl_37382.p1 fails validation.
(CTC)	 GT	14731-14816	GT	TGG
(CCC)	 AG	17225-17261	GT	AGG
(TTC)	 AG	19113-19241	GT	AGG
(GTT)	 AG	19563-19981	GT	AGG
(CCC)	 AG	20107-20221	AG	CCA
-recovered pasa_asmbl_37382.p1, internal, 17225, 17261
-recovered pasa_asmbl_37382.p1, internal, 19113, 19241
-recovered pasa_asmbl_37382.p1, internal, 19563, 19981
Valid prediction for snap_scaffold_28-snap.564-T1
Valid prediction for snap_scaffold_28-snap.592-T1
Valid prediction for GlimmerHMM_glimmerT_59715-T1
Valid prediction for Augustus_model.g39752.t1
Valid prediction for GeneMark_model.104199_t
Valid prediction for snap_scaffold_28-snap.549-T1
Valid prediction for GlimmerHMM_glimmerT_59728-T1
Valid prediction for GeneMark_model.104208_t
Valid prediction for snap_scaffold_28-snap.550-T1
Valid prediction for GlimmerHMM_glimmerT_59716-T1
Valid prediction for Augustus_model.g39736.t1
Valid prediction for GlimmerHMM_glimmerT_59725-T1
Valid prediction for snap_scaffold_28-snap.597-T1
Valid prediction for Augustus_model.g39764.t1
Valid prediction for GeneMark_model.104184_t
Valid prediction for Augustus_model.g39750.t1
Valid prediction for GlimmerHMM_glimmerT_59726-T1
Valid prediction for snap_scaffold_28-snap.560-T1
Valid prediction for snap_scaffold_28-snap.582-T1
Valid prediction for GlimmerHMM_glimmerT_59717-T1
Valid prediction for snap_scaffold_28-snap.567-T1
Valid prediction for CodingQuarry_transcript_43463-T1
Valid prediction for Augustus_model.g39765.t1
Valid prediction for GlimmerHMM_glimmerT_59732-T1
Valid prediction for snap_scaffold_28-snap.579-T1
Valid prediction for snap_scaffold_28-snap.563-T1
Valid prediction for Augustus_model.g39769.t1
Valid prediction for snap_scaffold_28-snap.556-T1
Valid prediction for GlimmerHMM_glimmerT_59724-T1
Valid prediction for snap_scaffold_28-snap.557-T1
Valid prediction for snap_scaffold_28-snap.591-T1
Valid prediction for HiQ_model.g39739.t1
Valid prediction for snap_scaffold_28-snap.586-T1
Valid prediction for snap_scaffold_28-snap.554-T1
Valid prediction for snap_scaffold_28-snap.587-T1
Couldn't classify 85031, 85162
Couldn't classify 85835, 85941
Sorry, prediction pasa_asmbl_37374.p1 fails validation.
(GGC)	 TG	85031-85162	GT	CGG
(ATA)	 AG	85442-85556	GT	CGG
(CTT)	 AG	85835-85941	GG	CTG
-recovered pasa_asmbl_37374.p1, internal, 85442, 85556
Valid prediction for Augustus_model.g39741.t1
Valid prediction for GlimmerHMM_glimmerT_59709-T1
Valid prediction for GeneMark_model.104194_t
Valid prediction for CodingQuarry_transcript_43466-T1
Valid prediction for HiQ_model.g39738.t1
Valid prediction for GeneMark_model.104222_t
Valid prediction for GlimmerHMM_glimmerT_59705-T1
Valid prediction for GeneMark_model.104192_t
Valid prediction for snap_scaffold_28-snap.574-T1
Valid prediction for snap_scaffold_28-snap.577-T1
Valid prediction for HiQ_model.g39746.t1
Valid prediction for GeneMark_model.104189_t
Valid prediction for GlimmerHMM_glimmerT_59719-T1
Valid prediction for GlimmerHMM_glimmerT_59736-T1
Valid prediction for GeneMark_model.104224_t
Valid prediction for snap_scaffold_28-snap.576-T1
Valid prediction for snap_scaffold_28-snap.568-T1
Valid prediction for snap_scaffold_28-snap.573-T1
Valid prediction for GlimmerHMM_glimmerT_59707-T1
Valid prediction for GlimmerHMM_glimmerT_59718-T1
Valid prediction for Augustus_model.g39757.t1
Valid prediction for Augustus_model.g39747.t1
Valid prediction for pasa_asmbl_37355.p1
Valid prediction for GlimmerHMM_glimmerT_59721-T1
Valid prediction for GeneMark_model.104220_t
Valid prediction for GeneMark_model.104180_t
Valid prediction for GeneMark_model.104202_t
Couldn't classify 143501, 143984
Sorry, prediction pasa_asmbl_37363.p1 fails validation.
(CTT)	 AG	143501-143984	GT	AGG
(ATT)	 AG	144069-144196	CG	AAC
add_exon() Sorry, pasa_asmbl_37363.p1 143501-143984-terminal-3 is invalid.
-recovered pasa_asmbl_37363.p1, terminal, 143501, 143984
-recovered pasa_asmbl_37363.p1, terminal, 144069, 144196
-recovered pasa_asmbl_37363.p1, internal, 143501, 143984
Valid prediction for GeneMark_model.104186_t
Valid prediction for snap_scaffold_28-snap.565-T1
Valid prediction for Augustus_model.g39767.t1
Valid prediction for GlimmerHMM_glimmerT_59743-T1
Valid prediction for GeneMark_model.104190_t
Valid prediction for GeneMark_model.104191_t
Valid prediction for Augustus_model.g39756.t1
Couldn't classify 25704, 25808
Sorry, prediction pasa_asmbl_37378.p1 fails validation.
(ATG)	 GA	24038-24460	GT	CGG
(GTC)	 AG	24601-24716	GT	AGG
(GTT)	 AG	25314-25485	GT	AGG
(ATT)	 AG	25704-25808	GG	ATG
-recovered pasa_asmbl_37378.p1, initial, 24038, 24460
-recovered pasa_asmbl_37378.p1, internal, 24601, 24716
-recovered pasa_asmbl_37378.p1, internal, 25314, 25485
Valid prediction for snap_scaffold_28-snap.599-T1
Valid prediction for GlimmerHMM_glimmerT_59734-T1
Valid prediction for GlimmerHMM_glimmerT_59729-T1
Valid prediction for CodingQuarry_transcript_43469-T1
Valid prediction for pasa_asmbl_37349.p1
Valid prediction for GlimmerHMM_glimmerT_59727-T1
Valid prediction for snap_scaffold_28-snap.551-T1
Valid prediction for GeneMark_model.104181_t
Couldn't classify 103269, 103325
Sorry, prediction pasa_asmbl_37369.p1 fails validation.
(AAA)	 CC	103269-103325	GT	AGG
(TGG)	 AG	104497-104642	GT	AGG
(CTA)	 AG	104886-105177	GC	AGG
(GAC)	 AG	105450-105569	GT	TGG
(GAA)	 AG	105810-105967	GT	TCG
(AAT)	 AG	106107-106218	GT	GGG
(GTG)	 AG	106362-106548	GT	AGG
(AAT)	 AG	106858-106982	GT	TTG
(AAC)	 AG	107273-107407	GT	AGG
(TCT)	 AG	107574-107661	GT	GAG
(ATA)	 AG	107823-107950	GT	TGG
(GAG)	 AG	108165-108303	GT	GAG
(TCC)	 AG	108545-108696	GT	AGG
(AAG)	 AG	108856-109006	GT	GGG
(ACT)	 AG	109432-109568	GT	AGG
(GGT)	 AG	109850-110039	GT	AGG
(GCC)	 AG	110378-110502	GT	AGG
(GGC)	 AG	110891-111063	GT	TGG
(GTA)	 AG	111233-111350	GT	CGG
(ATG)	 AG	111725-111838	GT	AGG
(ATC)	 AG	112049-112156	AG	AAA
-recovered pasa_asmbl_37369.p1, initial, 111725, 111838
-recovered pasa_asmbl_37369.p1, terminal, 112049, 112156
-recovered pasa_asmbl_37369.p1, internal, 104497, 104642
-recovered pasa_asmbl_37369.p1, internal, 104886, 105177
-recovered pasa_asmbl_37369.p1, internal, 105450, 105569
-recovered pasa_asmbl_37369.p1, internal, 105810, 105967
-recovered pasa_asmbl_37369.p1, internal, 106107, 106218
-recovered pasa_asmbl_37369.p1, internal, 106362, 106548
-recovered pasa_asmbl_37369.p1, internal, 106858, 106982
-recovered pasa_asmbl_37369.p1, internal, 107273, 107407
-recovered pasa_asmbl_37369.p1, internal, 107574, 107661
-recovered pasa_asmbl_37369.p1, internal, 107823, 107950
-recovered pasa_asmbl_37369.p1, internal, 108165, 108303
-recovered pasa_asmbl_37369.p1, internal, 108545, 108696
-recovered pasa_asmbl_37369.p1, internal, 108856, 109006
-recovered pasa_asmbl_37369.p1, internal, 109432, 109568
-recovered pasa_asmbl_37369.p1, internal, 109850, 110039
-recovered pasa_asmbl_37369.p1, internal, 110378, 110502
-recovered pasa_asmbl_37369.p1, internal, 110891, 111063
-recovered pasa_asmbl_37369.p1, internal, 111233, 111350
-recovered pasa_asmbl_37369.p1, internal, 111725, 111838
Valid prediction for CodingQuarry_transcript_43464-T1
Valid prediction for GlimmerHMM_glimmerT_59742-T1
Couldn't classify 152696, 152800
Sorry, prediction pasa_asmbl_37358.p1 fails validation.
(ATG)	 GG	149365-149373	GT	AGG
(GAA)	 AG	149903-150036	GT	AGG
(AAA)	 AG	150191-150350	GT	AGG
(GAC)	 AG	150493-150535	GT	AGG
(GTT)	 AG	150948-151165	GT	AGG
(ACG)	 AG	151262-151468	GT	AGG
(AGG)	 AG	151668-151814	GT	AGG
(GAT)	 AG	152022-152111	GT	AGG
(GAA)	 AG	152281-152379	GT	AGG
(ATA)	 AG	152696-152800	CC	AGC
-recovered pasa_asmbl_37358.p1, initial, 149365, 149373
-recovered pasa_asmbl_37358.p1, internal, 149903, 150036
-recovered pasa_asmbl_37358.p1, internal, 150191, 150350
-recovered pasa_asmbl_37358.p1, internal, 150493, 150535
-recovered pasa_asmbl_37358.p1, internal, 150948, 151165
-recovered pasa_asmbl_37358.p1, internal, 151262, 151468
-recovered pasa_asmbl_37358.p1, internal, 151668, 151814
-recovered pasa_asmbl_37358.p1, internal, 152022, 152111
-recovered pasa_asmbl_37358.p1, internal, 152281, 152379
Valid prediction for GlimmerHMM_glimmerT_59745-T1
Valid prediction for snap_scaffold_28-snap.601-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 122560, rend_intergenic: 122315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130577, rend_intergenic: 126016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138383, rend_intergenic: 133497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191037, rend_intergenic: 186028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 206297
-exon list size: 780


building trellis

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24.3    
24.4    
24.6    
24.7    
24.8    
24.9    
25.1    
25.2    
25.3    
25.4    
25.6    
25.7    
25.8    
26.0    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.3    
28.4    
28.5    
28.6    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.6    
30.7    
30.8    
30.9    
31.1    
31.2    
31.3    
31.5    
31.6    
31.7    
31.8    
32.0    
32.1    
32.2    
32.4    
32.5    
32.6    
32.7    
32.9    
33.0    
33.1    
33.2    
33.4    
33.5    
33.6    
33.8    
33.9    
34.0    
34.1    
34.3    
34.4    
34.5    
34.7    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.1    
36.2    
36.3    
36.4    
36.6    
36.7    
36.8    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.7    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.4    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.6    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.7    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 122560, rend_intergenic: 122315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130577, rend_intergenic: 126016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138383, rend_intergenic: 133497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191037, rend_intergenic: 186028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 39 predictions persist after filtering for low support