-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_1859458-1982237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.104122_t
Valid prediction for GeneMark_model.104106_t
Valid prediction for snap_scaffold_28-snap.450-T1
Valid prediction for GlimmerHMM_glimmerT_59629-T1
Valid prediction for GeneMark_model.104110_t
Valid prediction for snap_scaffold_28-snap.471-T1
Valid prediction for snap_scaffold_28-snap.470-T1
Valid prediction for snap_scaffold_28-snap.453-T1
Valid prediction for GeneMark_model.104125_t
Valid prediction for snap_scaffold_28-snap.469-T1
Valid prediction for snap_scaffold_28-snap.454-T1
Valid prediction for Augustus_model.g39690.t1
Valid prediction for Augustus_model.g39694.t1
Valid prediction for GlimmerHMM_glimmerT_59642-T1
Valid prediction for GlimmerHMM_glimmerT_59632-T1
Valid prediction for snap_scaffold_28-snap.474-T1
Valid prediction for GlimmerHMM_glimmerT_59639-T1
Valid prediction for GeneMark_model.104130_t
Valid prediction for GeneMark_model.104131_t
Valid prediction for snap_scaffold_28-snap.463-T1
Valid prediction for snap_scaffold_28-snap.467-T1
Valid prediction for GlimmerHMM_glimmerT_59637-T1
Valid prediction for GeneMark_model.104114_t
Valid prediction for GlimmerHMM_glimmerT_59630-T1
Valid prediction for GlimmerHMM_glimmerT_59647-T1
Valid prediction for snap_scaffold_28-snap.468-T1
Valid prediction for snap_scaffold_28-snap.445-T1
Valid prediction for GlimmerHMM_glimmerT_59633-T1
Valid prediction for GeneMark_model.104105_t
Valid prediction for GeneMark_model.104108_t
Valid prediction for snap_scaffold_28-snap.476-T1
Valid prediction for GeneMark_model.104120_t
Valid prediction for snap_scaffold_28-snap.456-T1
Valid prediction for GeneMark_model.104112_t
Valid prediction for GlimmerHMM_glimmerT_59635-T1
Valid prediction for GeneMark_model.104116_t
Valid prediction for GeneMark_model.104132_t
Valid prediction for snap_scaffold_28-snap.448-T1
Valid prediction for GeneMark_model.104109_t
Valid prediction for GeneMark_model.104126_t
Valid prediction for GlimmerHMM_glimmerT_59640-T1
Valid prediction for snap_scaffold_28-snap.459-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59648-T1
Valid prediction for GlimmerHMM_glimmerT_59650-T1
Valid prediction for GeneMark_model.104128_t
Valid prediction for GlimmerHMM_glimmerT_59638-T1
Valid prediction for GeneMark_model.104113_t
Valid prediction for GeneMark_model.104121_t
Valid prediction for snap_scaffold_28-snap.444-T1
Valid prediction for GeneMark_model.104124_t
Valid prediction for GlimmerHMM_glimmerT_59649-T1
Valid prediction for snap_scaffold_28-snap.443-T1
Valid prediction for snap_scaffold_28-snap.457-T1
Valid prediction for snap_scaffold_28-snap.460-T1
Valid prediction for Augustus_model.g39687.t1
Valid prediction for GlimmerHMM_glimmerT_59631-T1
Valid prediction for snap_scaffold_28-snap.461-T1
Valid prediction for snap_scaffold_28-snap.466-T1
Valid prediction for Augustus_model.g39685.t1
Valid prediction for GeneMark_model.104115_t
Valid prediction for GeneMark_model.104104_t
Valid prediction for Augustus_model.g39683.t1
Valid prediction for GlimmerHMM_glimmerT_59641-T1
Valid prediction for GlimmerHMM_glimmerT_59634-T1
Valid prediction for GeneMark_model.104102_t
Valid prediction for GlimmerHMM_glimmerT_59646-T1
Valid prediction for Augustus_model.g39692.t1
Valid prediction for GeneMark_model.104119_t
Valid prediction for snap_scaffold_28-snap.442-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.104117_t
Valid prediction for GeneMark_model.104118_t
Valid prediction for Augustus_model.g39682.t1
Valid prediction for Augustus_model.g39693.t1
Valid prediction for snap_scaffold_28-snap.465-T1
Valid prediction for snap_scaffold_28-snap.452-T1
Valid prediction for Augustus_model.g39688.t1
Valid prediction for snap_scaffold_28-snap.464-T1
Valid prediction for snap_scaffold_28-snap.475-T1
Valid prediction for GeneMark_model.104107_t
Valid prediction for GlimmerHMM_glimmerT_59643-T1
Valid prediction for snap_scaffold_28-snap.455-T1
Valid prediction for snap_scaffold_28-snap.473-T1
Valid prediction for GeneMark_model.104133_t
Valid prediction for snap_scaffold_28-snap.472-T1
Valid prediction for snap_scaffold_28-snap.458-T1
Valid prediction for GlimmerHMM_glimmerT_59636-T1
Valid prediction for Augustus_model.g39684.t1
Valid prediction for Augustus_model.g39689.t1
Valid prediction for GlimmerHMM_glimmerT_59645-T1
Valid prediction for GlimmerHMM_glimmerT_59644-T1
Valid prediction for snap_scaffold_28-snap.451-T1
Valid prediction for Augustus_model.g39686.t1
Valid prediction for snap_scaffold_28-snap.449-T1
Valid prediction for Augustus_model.g39691.t1
Valid prediction for GlimmerHMM_glimmerT_59628-T1
Valid prediction for GeneMark_model.104129_t
Valid prediction for snap_scaffold_28-snap.447-T1
Valid prediction for snap_scaffold_28-snap.446-T1
Valid prediction for GeneMark_model.104123_t
Valid prediction for snap_scaffold_28-snap.462-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15648, rend_intergenic: 11537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29513, rend_intergenic: 19444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53950, rend_intergenic: 49293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74863, rend_intergenic: 71067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80479, rend_intergenic: 78101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 122780
-exon list size: 457


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.5    
1.7    
2.0    
2.2    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.7    
5.9    
6.1    
6.3    
6.5    
6.8    
7.0    
7.2    
7.4    
7.6    
7.8    
8.1    
8.3    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
10.5    
10.7    
10.9    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.4    
12.6    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.2    
14.4    
14.6    
14.8    
15.0    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.6    
16.8    
17.0    
17.2    
17.4    
17.6    
17.9    
18.1    
18.3    
18.5    
18.7    
19.0    
19.2    
19.4    
19.6    
19.8    
20.0    
20.3    
20.5    
20.7    
20.9    
21.1    
21.4    
21.6    
21.8    
22.0    
22.2    
22.4    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
24.0    
24.2    
24.4    
24.6    
24.8    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.4    
26.6    
26.8    
27.0    
27.2    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.1    
30.3    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.2    
36.4    
36.6    
36.8    
37.0    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.2    
39.4    
39.7    
39.9    
40.1    
40.3    
40.5    
40.7    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.3    
42.5    
42.7    
42.9    
43.1    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.3    
45.5    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.0    
49.2    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.8    
51.0    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.5    
54.7    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.9    
57.1    
57.3    
57.5    
57.7    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.6    
60.8    
61.0    
61.2    
61.4    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
63.0    
63.2    
63.4    
63.6    
63.8    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
69.7    
69.9    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.8    
73.0    
73.2    
73.4    
73.6    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.2    
75.4    
75.6    
75.8    
76.0    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.9    
79.1    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.6    
80.8    
81.0    
81.3    
81.5    
81.7    
81.9    
82.1    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
85.0    
85.2    
85.4    
85.6    
85.8    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.4    
87.6    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.7    
91.9    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.8    
98.0    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 15648, rend_intergenic: 11537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29513, rend_intergenic: 19444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53950, rend_intergenic: 49293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74863, rend_intergenic: 71067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80479, rend_intergenic: 78101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support