-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_28/scaffold_28_1020575-1234644

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_28-snap.254-T1
Valid prediction for GeneMark_model.103878_t
Valid prediction for snap_scaffold_28-snap.244-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.249-T1
Valid prediction for snap_scaffold_28-snap.252-T1
Valid prediction for GeneMark_model.103827_t
Valid prediction for GeneMark_model.103854_t
Valid prediction for GeneMark_model.103860_t
Valid prediction for snap_scaffold_28-snap.246-T1
Valid prediction for snap_scaffold_28-snap.231-T1
Valid prediction for GeneMark_model.103857_t
Valid prediction for snap_scaffold_28-snap.256-T1
Valid prediction for snap_scaffold_28-snap.250-T1
Valid prediction for GlimmerHMM_glimmerT_59498-T1
Valid prediction for GeneMark_model.103870_t
Valid prediction for GeneMark_model.103862_t
Valid prediction for GeneMark_model.103864_t
Valid prediction for Augustus_model.g39593.t1
Valid prediction for GeneMark_model.103872_t
Valid prediction for GlimmerHMM_glimmerT_59486-T1
Valid prediction for snap_scaffold_28-snap.237-T1
Valid prediction for snap_scaffold_28-snap.273-T1
Valid prediction for GeneMark_model.103859_t
Valid prediction for GlimmerHMM_glimmerT_59492-T1
Valid prediction for snap_scaffold_28-snap.243-T1
Valid prediction for GeneMark_model.103884_t
Valid prediction for GeneMark_model.103829_t
Valid prediction for snap_scaffold_28-snap.240-T1
Valid prediction for snap_scaffold_28-snap.247-T1
Valid prediction for snap_scaffold_28-snap.235-T1
Valid prediction for snap_scaffold_28-snap.263-T1
Valid prediction for snap_scaffold_28-snap.265-T1
Valid prediction for GeneMark_model.103831_t
Valid prediction for GlimmerHMM_glimmerT_59497-T1
Valid prediction for GlimmerHMM_glimmerT_59475-T1
Valid prediction for GeneMark_model.103844_t
Valid prediction for GeneMark_model.103875_t
Valid prediction for snap_scaffold_28-snap.226-T1
Valid prediction for Augustus_model.g39598.t1
Valid prediction for snap_scaffold_28-snap.248-T1
Valid prediction for GlimmerHMM_glimmerT_59488-T1
Valid prediction for GlimmerHMM_glimmerT_59479-T1
Valid prediction for snap_scaffold_28-snap.258-T1
Valid prediction for GeneMark_model.103880_t
Valid prediction for GlimmerHMM_glimmerT_59495-T1
Valid prediction for snap_scaffold_28-snap.251-T1
Valid prediction for GlimmerHMM_glimmerT_59473-T1
Valid prediction for snap_scaffold_28-snap.234-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.103847_t
Valid prediction for GeneMark_model.103881_t
Valid prediction for snap_scaffold_28-snap.233-T1
Valid prediction for GeneMark_model.103825_t
Valid prediction for GeneMark_model.103866_t
Valid prediction for GlimmerHMM_glimmerT_59501-T1
Valid prediction for snap_scaffold_28-snap.270-T1
Valid prediction for Augustus_model.g39585.t1
Valid prediction for GeneMark_model.103835_t
Valid prediction for snap_scaffold_28-snap.267-T1
Valid prediction for snap_scaffold_28-snap.261-T1
Valid prediction for GlimmerHMM_glimmerT_59481-T1
Valid prediction for GlimmerHMM_glimmerT_59480-T1
Valid prediction for GlimmerHMM_glimmerT_59494-T1
Valid prediction for snap_scaffold_28-snap.264-T1
Valid prediction for snap_scaffold_28-snap.230-T1
Valid prediction for snap_scaffold_28-snap.228-T1
Valid prediction for GeneMark_model.103873_t
Valid prediction for GeneMark_model.103856_t
Valid prediction for GeneMark_model.103877_t
Valid prediction for snap_scaffold_28-snap.271-T1
Valid prediction for GlimmerHMM_glimmerT_59499-T1
Valid prediction for GeneMark_model.103837_t
Valid prediction for snap_scaffold_28-snap.225-T1
Valid prediction for snap_scaffold_28-snap.260-T1
Valid prediction for Augustus_model.g39599.t1
Valid prediction for Augustus_model.g39584.t1
Couldn't classify 795, 963
Sorry, prediction pasa_asmbl_37994.p1 fails validation.
(CTC)	 GT	795-963	GT	AGG
(GAA)	 AG	1082-1265	GT	AGG
(GTA)	 AG	1531-1686	GT	AGG
(TGA)	 AG	2940-3176	GT	CAG
(TTT)	 AG	3391-3535	GG	GAG
-recovered pasa_asmbl_37994.p1, terminal, 3391, 3535
-recovered pasa_asmbl_37994.p1, internal, 1082, 1265
-recovered pasa_asmbl_37994.p1, internal, 1531, 1686
-recovered pasa_asmbl_37994.p1, internal, 2940, 3176
Valid prediction for GeneMark_model.103833_t
Valid prediction for GeneMark_model.103842_t
Valid prediction for Augustus_model.g39592.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.103839_t
Valid prediction for GeneMark_model.103883_t
Valid prediction for Augustus_model.g39589.t1
Valid prediction for GeneMark_model.103868_t
Valid prediction for GeneMark_model.103851_t
Valid prediction for GlimmerHMM_glimmerT_59487-T1
Valid prediction for snap_scaffold_28-snap.229-T1
Valid prediction for Augustus_model.g39596.t1
Valid prediction for GeneMark_model.103848_t
Couldn't classify 128339, 128701
Sorry, prediction pasa_asmbl_37287.p1 fails validation.
(CGC)	 GC	128339-128701	GC	GAG
Valid prediction for GeneMark_model.103834_t
Valid prediction for GeneMark_model.103885_t
Valid prediction for GlimmerHMM_glimmerT_59489-T1
Valid prediction for GeneMark_model.103832_t
Valid prediction for GlimmerHMM_glimmerT_59472-T1
Couldn't classify 73870, 73979
Sorry, prediction pasa_asmbl_37301.p2 fails validation.
(ATG)	 GC	69515-69655	GT	AGG
(ATT)	 AG	70148-70210	GT	AGG
(ACC)	 AG	70856-70954	GT	TCG
(AAT)	 AG	72007-72103	GT	AGG
(ACC)	 AG	72487-72606	GT	CGG
(AGC)	 AG	73870-73979	GA	GCG
-recovered pasa_asmbl_37301.p2, initial, 69515, 69655
add_exon() Sorry, pasa_asmbl_37301.p2 72007-72103-terminal-3 is invalid.
-recovered pasa_asmbl_37301.p2, terminal, 72007, 72103
-recovered pasa_asmbl_37301.p2, internal, 70148, 70210
-recovered pasa_asmbl_37301.p2, internal, 70856, 70954
-recovered pasa_asmbl_37301.p2, internal, 72007, 72103
-recovered pasa_asmbl_37301.p2, internal, 72487, 72606
Valid prediction for snap_scaffold_28-snap.253-T1
Valid prediction for GlimmerHMM_glimmerT_59493-T1
Valid prediction for GeneMark_model.103852_t
Valid prediction for GlimmerHMM_glimmerT_59477-T1
Valid prediction for Augustus_model.g39595.t1
Valid prediction for GeneMark_model.103858_t
Valid prediction for Augustus_model.g39594.t1
Valid prediction for snap_scaffold_28-snap.241-T1
Valid prediction for snap_scaffold_28-snap.272-T1
Valid prediction for Augustus_model.g39581.t1
Valid prediction for snap_scaffold_28-snap.232-T1
Valid prediction for snap_scaffold_28-snap.257-T1
Valid prediction for GeneMark_model.103879_t
Valid prediction for GeneMark_model.103874_t
Valid prediction for GlimmerHMM_glimmerT_59485-T1
Valid prediction for Augustus_model.g39580.t1
Valid prediction for snap_scaffold_28-snap.266-T1
Valid prediction for GeneMark_model.103863_t
Valid prediction for snap_scaffold_28-snap.227-T1
Valid prediction for snap_scaffold_28-snap.262-T1
Valid prediction for snap_scaffold_28-snap.255-T1
Valid prediction for Augustus_model.g39582.t1
Couldn't classify 125204, 125273
Couldn't classify 125415, 125986
Sorry, prediction pasa_asmbl_37291.p1 fails validation.
(GCC)	 CC	125204-125273	GT	CGG
(AAA)	 AG	125415-125986	AG	AGA
Valid prediction for Augustus_model.g39590.t1
Valid prediction for GlimmerHMM_glimmerT_59482-T1
Valid prediction for HiQ_model.g39587.t1
Valid prediction for GlimmerHMM_glimmerT_59500-T1
Valid prediction for GlimmerHMM_glimmerT_59491-T1
Valid prediction for GeneMark_model.103855_t
Valid prediction for GeneMark_model.103882_t
Valid prediction for GeneMark_model.103830_t
Valid prediction for GeneMark_model.103841_t
Valid prediction for Augustus_model.g39597.t1
Valid prediction for GeneMark_model.103876_t
Valid prediction for GeneMark_model.103846_t
Valid prediction for GeneMark_model.103838_t
Valid prediction for GlimmerHMM_glimmerT_59474-T1
Valid prediction for GeneMark_model.103867_t
Valid prediction for GeneMark_model.103853_t
Valid prediction for snap_scaffold_28-snap.238-T1
Valid prediction for snap_scaffold_28-snap.268-T1
Valid prediction for GeneMark_model.103826_t
Couldn't classify 79621, 79953
Sorry, prediction pasa_asmbl_37298.p1 fails validation.
(CTG)	 GT	79621-79953	GA	AGG
Valid prediction for GlimmerHMM_glimmerT_59483-T1
Valid prediction for snap_scaffold_28-snap.239-T1
Valid prediction for snap_scaffold_28-snap.245-T1
Valid prediction for GeneMark_model.103836_t
Valid prediction for GlimmerHMM_glimmerT_59478-T1
Valid prediction for GeneMark_model.103845_t
Valid prediction for Augustus_model.g39588.t1
Valid prediction for GeneMark_model.103843_t
Valid prediction for snap_scaffold_28-snap.242-T1
Valid prediction for GeneMark_model.103840_t
Valid prediction for GeneMark_model.103871_t
Valid prediction for Augustus_model.g39600.t1
Valid prediction for Augustus_model.g39591.t1
Valid prediction for snap_scaffold_28-snap.236-T1
Valid prediction for GeneMark_model.103849_t
Valid prediction for GlimmerHMM_glimmerT_59476-T1
Valid prediction for Augustus_model.g39583.t1
Couldn't classify 74785, 74886
Couldn't classify 78623, 78682
Sorry, prediction pasa_asmbl_37300.p2 fails validation.
(GAG)	 GG	74785-74886	GT	CGG
(TGC)	 AG	75874-76087	GT	AGG
(CGG)	 AG	77829-77944	GT	AGG
(AAG)	 AG	78623-78682	CG	GCC
-recovered pasa_asmbl_37300.p2, internal, 75874, 76087
-recovered pasa_asmbl_37300.p2, internal, 77829, 77944
Valid prediction for snap_scaffold_28-snap.259-T1
Valid prediction for GlimmerHMM_glimmerT_59490-T1
Valid prediction for GeneMark_model.103828_t
Valid prediction for GeneMark_model.103869_t
Valid prediction for GlimmerHMM_glimmerT_59496-T1
Valid prediction for snap_scaffold_28-snap.269-T1
Valid prediction for GeneMark_model.103850_t
Valid prediction for Augustus_model.g39586.t1
Couldn't classify 122238, 122387
Couldn't classify 123523, 123689
Sorry, prediction pasa_asmbl_37935.p1 fails validation.
(ATC)	 AC	122238-122387	GT	AGG
(GAG)	 AG	122739-122832	GT	CAG
(GCT)	 AG	123523-123689	AT	GCA
-recovered pasa_asmbl_37935.p1, internal, 122739, 122832
Valid prediction for GlimmerHMM_glimmerT_59484-T1
Couldn't classify 118693, 118852
Couldn't classify 120451, 120550
Sorry, prediction pasa_asmbl_37292.p1 fails validation.
(CGC)	 GG	118693-118852	GT	AGG
(ACA)	 AG	119159-119271	GT	AGG
(AAA)	 AG	120064-120179	GT	AGG
(GCT)	 AG	120451-120550	GC	CAG
-recovered pasa_asmbl_37292.p1, internal, 119159, 119271
-recovered pasa_asmbl_37292.p1, internal, 120064, 120179
-recovered pasa_asmbl_37292.p1, internal, 120451, 120550
Valid prediction for GeneMark_model.103865_t
Valid prediction for GeneMark_model.103861_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33809, rend_intergenic: 33304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36867, rend_intergenic: 35530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54825, rend_intergenic: 38042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56139, rend_intergenic: 56132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58006, rend_intergenic: 56234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61554, rend_intergenic: 58068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67406, rend_intergenic: 62071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74128, rend_intergenic: 70545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81738, rend_intergenic: 78097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87076, rend_intergenic: 85370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109595, rend_intergenic: 87096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127204, rend_intergenic: 123922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145627, rend_intergenic: 133959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147314, rend_intergenic: 145722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160786, rend_intergenic: 149017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164852, rend_intergenic: 162135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171115, rend_intergenic: 164881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185455, rend_intergenic: 182379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188313, rend_intergenic: 186677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190822, rend_intergenic: 189214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196956, rend_intergenic: 194294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203414, rend_intergenic: 199360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212142, rend_intergenic: 205358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 214070
-exon list size: 935


building trellis

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49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 33809, rend_intergenic: 33304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36867, rend_intergenic: 35530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54825, rend_intergenic: 38042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56139, rend_intergenic: 56132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58006, rend_intergenic: 56234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61554, rend_intergenic: 58068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67406, rend_intergenic: 62071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74128, rend_intergenic: 70545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81738, rend_intergenic: 78097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87076, rend_intergenic: 85370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109595, rend_intergenic: 87096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127204, rend_intergenic: 123922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145627, rend_intergenic: 133959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147314, rend_intergenic: 145722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160786, rend_intergenic: 149017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164852, rend_intergenic: 162135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171115, rend_intergenic: 164881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185455, rend_intergenic: 182379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188313, rend_intergenic: 186677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190822, rend_intergenic: 189214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196956, rend_intergenic: 194294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203414, rend_intergenic: 199360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212142, rend_intergenic: 205358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support