-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2797

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 964, 1091
Sorry, prediction GeneMark_model.110604_t fails validation.
(ATG)	 CC	648-691	GT	AGG
(GAA)	 AG	718-738	GT	AGG
(CTT)	 AG	964-1091	GT	GGG
-recovered GeneMark_model.110604_t, initial, 648, 691
-recovered GeneMark_model.110604_t, internal, 718, 738
-recovered GeneMark_model.110604_t, internal, 964, 1091
Couldn't classify 35, 115
Sorry, prediction GeneMark_model.110603_t fails validation.
(AGC)	 AG	35-115	GC	GAG
(AGA)	 AG	141-149	GT	GAG
(AGA)	 AG	177-233	GT	GAG
(AGA)	 AG	263-289	GC	GAG
(AGC)	 AG	317-337	GT	GAG
(AGA)	 AG	361-393	GT	GAG
(AGA)	 AG	417-437	GT	GAG
(TAA)	 AG	463-519	GT	GAG
(AGA)	 AG	541-613	GA	AAG
-recovered GeneMark_model.110603_t, terminal, 541, 613
-recovered GeneMark_model.110603_t, internal, 35, 115
-recovered GeneMark_model.110603_t, internal, 141, 149
-recovered GeneMark_model.110603_t, internal, 177, 233
-recovered GeneMark_model.110603_t, internal, 263, 289
-recovered GeneMark_model.110603_t, internal, 317, 337
-recovered GeneMark_model.110603_t, internal, 361, 393
-recovered GeneMark_model.110603_t, internal, 417, 437
-recovered GeneMark_model.110603_t, internal, 463, 519

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 219
Sorry, prediction snap_scaffold_2797-snap.1-T1 fails validation.
(TCA)	 AG	37-219	GT	ATG
-recovered snap_scaffold_2797-snap.1-T1, internal, 37, 219

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1122
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support