-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2796

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 869, 943
Sorry, prediction Augustus_model.g42182.t1 fails validation.
(ATG)	 TG	580-688	GT	TGG
(ACC)	 AG	869-943	GT	GGG
-recovered Augustus_model.g42182.t1, initial, 580, 688
-recovered Augustus_model.g42182.t1, internal, 869, 943
Couldn't classify 869, 1086
Sorry, prediction snap_scaffold_2796-snap.1-T1 fails validation.
(ATG)	 TG	580-688	GT	TGG
(ACC)	 AG	869-1086	GT	TGG
-recovered snap_scaffold_2796-snap.1-T1, initial, 580, 688
-recovered snap_scaffold_2796-snap.1-T1, internal, 869, 1086
Couldn't classify 599, 688
Couldn't classify 869, 1092
Sorry, prediction GeneMark_model.110602_t fails validation.
(GCG)	 AG	599-688	GT	TGG
(ACC)	 AG	869-1092	GC	AGG
-recovered GeneMark_model.110602_t, internal, 599, 688
-recovered GeneMark_model.110602_t, internal, 869, 1092
Valid prediction for GlimmerHMM_glimmerT_63215-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1122
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support