-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2793

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 70
Couldn't classify 990, 1037
Sorry, prediction GeneMark_model.110600_t fails validation.
(AGA)	 AG	36-70	GT	CAG
(CGC)	 AG	420-429	GT	CAG
(AGA)	 AG	784-804	GT	GAG
(AGA)	 AG	830-862	GC	GAG
(AGC)	 AG	886-906	GC	GAG
(CAA)	 AG	930-968	GC	GAG
(CGA)	 AG	990-1037	GT	ATG
-recovered GeneMark_model.110600_t, internal, 36, 70
-recovered GeneMark_model.110600_t, internal, 420, 429
-recovered GeneMark_model.110600_t, internal, 784, 804
-recovered GeneMark_model.110600_t, internal, 830, 862
-recovered GeneMark_model.110600_t, internal, 886, 906
-recovered GeneMark_model.110600_t, internal, 930, 968
-recovered GeneMark_model.110600_t, internal, 990, 1037

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1123
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support