-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2792

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 227, 243
Couldn't classify 835, 845
Sorry, prediction GeneMark_model.110599_t fails validation.
(AAC)	 AG	227-243	GT	GAG
(AGA)	 AG	367-384	GT	AGG
(AGA)	 AG	407-430	GT	AGG
(AGG)	 AG	453-476	GT	AGG
(AGG)	 AG	501-512	GT	AGG
(AGG)	 AG	535-546	GT	AGG
(AGA)	 AG	567-572	GT	GGG
(AGA)	 AG	597-602	GT	AGG
(GAG)	 AG	625-636	GT	AGG
(GGG)	 AG	659-670	GT	AGG
(AGA)	 AG	691-696	GT	AGG
(AGA)	 AG	717-740	GT	AGG
(GGT)	 AG	763-774	GT	AGG
(AGA)	 AG	795-812	GT	AGG
(GGG)	 AG	835-845	GT	GGG
-recovered GeneMark_model.110599_t, internal, 227, 243
-recovered GeneMark_model.110599_t, internal, 367, 384
-recovered GeneMark_model.110599_t, internal, 407, 430
-recovered GeneMark_model.110599_t, internal, 453, 476
-recovered GeneMark_model.110599_t, internal, 501, 512
-recovered GeneMark_model.110599_t, internal, 535, 546
-recovered GeneMark_model.110599_t, internal, 567, 572
-recovered GeneMark_model.110599_t, internal, 597, 602
-recovered GeneMark_model.110599_t, internal, 625, 636
-recovered GeneMark_model.110599_t, internal, 659, 670
-recovered GeneMark_model.110599_t, internal, 691, 696
-recovered GeneMark_model.110599_t, internal, 717, 740
-recovered GeneMark_model.110599_t, internal, 763, 774
-recovered GeneMark_model.110599_t, internal, 795, 812
-recovered GeneMark_model.110599_t, internal, 835, 845

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1123
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support