-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2791

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 46
Couldn't classify 958, 964
Sorry, prediction GeneMark_model.110598_t fails validation.
(GGA)	 AG	38-46	GT	AGG
(TCT)	 AG	68-86	GT	GTG
(CTG)	 AG	126-181	GT	CAG
(GGT)	 AG	386-428	GT	GGG
(AGA)	 AG	580-596	GT	GTG
(AGA)	 AG	694-702	GT	GAG
(AGA)	 AG	754-762	GT	GAG
(AGT)	 AG	842-850	GT	GAG
(AGA)	 AG	958-964	GT	GAG
-recovered GeneMark_model.110598_t, terminal, 842, 850
-recovered GeneMark_model.110598_t, internal, 38, 46
-recovered GeneMark_model.110598_t, internal, 68, 86
-recovered GeneMark_model.110598_t, internal, 126, 181
-recovered GeneMark_model.110598_t, internal, 386, 428
-recovered GeneMark_model.110598_t, internal, 580, 596
-recovered GeneMark_model.110598_t, internal, 694, 702
-recovered GeneMark_model.110598_t, internal, 754, 762
-recovered GeneMark_model.110598_t, internal, 842, 850
-recovered GeneMark_model.110598_t, internal, 958, 964

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1123
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support