-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2790

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 790, 958
Sorry, prediction GlimmerHMM_glimmerT_63214-T1 fails validation.
(ATG)	 AG	232-380	GT	AGG
(GCT)	 AG	790-958	GT	AGG
-recovered GlimmerHMM_glimmerT_63214-T1, initial, 232, 380
-recovered GlimmerHMM_glimmerT_63214-T1, internal, 232, 380
-recovered GlimmerHMM_glimmerT_63214-T1, internal, 790, 958
Couldn't classify 60, 107
Sorry, prediction GeneMark_model.110597_t fails validation.
(GGC)	 AG	60-107	GT	AGG
(CCC)	 AG	197-380	GT	AGG
(GCT)	 AG	790-958	GT	AGG
(TGT)	 AG	1008-1013	AC	AGA
-recovered GeneMark_model.110597_t, terminal, 1008, 1013
-recovered GeneMark_model.110597_t, internal, 60, 107
-recovered GeneMark_model.110597_t, internal, 197, 380
-recovered GeneMark_model.110597_t, internal, 790, 958
Couldn't classify 60, 107
Couldn't classify 790, 958
Sorry, prediction Augustus_model.g42180.t1 fails validation.
(GGC)	 AG	60-107	GT	AGG
(CCC)	 AG	197-380	GT	AGG
(GCT)	 AG	790-958	GT	AGG
-recovered Augustus_model.g42180.t1, internal, 60, 107
-recovered Augustus_model.g42180.t1, internal, 197, 380
-recovered Augustus_model.g42180.t1, internal, 790, 958
Couldn't classify 60, 107
Couldn't classify 790, 958
Sorry, prediction snap_scaffold_2790-snap.1-T1 fails validation.
(GGC)	 AG	60-107	GT	AGG
(CCC)	 AG	197-380	GT	AGG
(GCT)	 AG	790-958	GT	AGG
-recovered snap_scaffold_2790-snap.1-T1, internal, 60, 107
-recovered snap_scaffold_2790-snap.1-T1, internal, 197, 380
-recovered snap_scaffold_2790-snap.1-T1, internal, 790, 958

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1123
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support