-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_279

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_279-snap.1-T1
Valid prediction for GeneMark_model.107165_t
Couldn't classify 17, 202
Sorry, prediction GeneMark_model.107163_t fails validation.
(AGA)	 AG	17-202	GT	GAG
(AGT)	 AG	223-249	GT	GCG
(AGT)	 AG	282-335	GT	GAG
(ATG)	 AG	379-382	CA	GAC
-recovered GeneMark_model.107163_t, terminal, 379, 382
-recovered GeneMark_model.107163_t, internal, 17, 202
-recovered GeneMark_model.107163_t, internal, 223, 249
-recovered GeneMark_model.107163_t, internal, 282, 335
Valid prediction for GlimmerHMM_glimmerT_61625-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40973.t1
Valid prediction for GeneMark_model.107164_t
Couldn't classify 2121, 2198
Sorry, prediction GeneMark_model.107166_t fails validation.
(ACA)	 AG	2121-2198	GT	GGG
(AAG)	 AG	2244-2340	AC	GAA
-recovered GeneMark_model.107166_t, terminal, 2244, 2340
-recovered GeneMark_model.107166_t, internal, 2121, 2198
Valid prediction for GlimmerHMM_glimmerT_61624-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8645
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support