-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2783

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 216, 304
Sorry, prediction GeneMark_model.110591_t fails validation.
(CTC)	 AG	216-304	GT	TGG
(AAG)	 AG	459-582	GT	ATG
(GTT)	 AG	793-989	CA	AAC
-recovered GeneMark_model.110591_t, terminal, 793, 989
-recovered GeneMark_model.110591_t, internal, 216, 304
-recovered GeneMark_model.110591_t, internal, 459, 582
Couldn't classify 793, 915
Sorry, prediction Augustus_model.g42178.t1 fails validation.
(ATG)	 AT	143-304	GT	TGG
(AAG)	 AG	459-582	GT	ATG
(GTT)	 AG	793-915	GT	GGG
-recovered Augustus_model.g42178.t1, initial, 143, 304
-recovered Augustus_model.g42178.t1, internal, 459, 582
-recovered Augustus_model.g42178.t1, internal, 793, 915
Couldn't classify 216, 304
Couldn't classify 793, 915
Sorry, prediction snap_scaffold_2783-snap.1-T1 fails validation.
(CTC)	 AG	216-304	GT	TGG
(AAG)	 AG	459-582	GT	ATG
(GTT)	 AG	793-915	GT	GGG
-recovered snap_scaffold_2783-snap.1-T1, internal, 216, 304
-recovered snap_scaffold_2783-snap.1-T1, internal, 459, 582
-recovered snap_scaffold_2783-snap.1-T1, internal, 793, 915
Couldn't classify 216, 304
Sorry, prediction GlimmerHMM_glimmerT_63213-T1 fails validation.
(CTC)	 AG	216-304	GT	TGG
(AAG)	 AG	459-582	GT	ATG
(GTT)	 AG	793-989	CA	AAC
-recovered GlimmerHMM_glimmerT_63213-T1, terminal, 793, 989
-recovered GlimmerHMM_glimmerT_63213-T1, internal, 216, 304
-recovered GlimmerHMM_glimmerT_63213-T1, internal, 459, 582

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1124
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support