-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2779

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 979, 986
Sorry, prediction GeneMark_model.110589_t fails validation.
(ATG)	 TG	632-745	GT	TGG
(CAG)	 AG	773-957	GT	GAG
(GGT)	 AG	979-986	GT	AGG
-recovered GeneMark_model.110589_t, initial, 632, 745
-recovered GeneMark_model.110589_t, internal, 773, 957
-recovered GeneMark_model.110589_t, internal, 979, 986
Couldn't classify 615, 895
Sorry, prediction snap_scaffold_2779-snap.1-T1 fails validation.
(ATG)	 CC	256-262	GT	TTG
(GTG)	 AG	615-895	GT	TAG
-recovered snap_scaffold_2779-snap.1-T1, initial, 256, 262
-recovered snap_scaffold_2779-snap.1-T1, internal, 615, 895

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 208, 355
Couldn't classify 665, 765
Sorry, prediction Augustus_model.g42175.t1 fails validation.
(GTA)	 AG	208-355	GT	TGG
(GGA)	 AG	665-765	GT	AGG
-recovered Augustus_model.g42175.t1, internal, 208, 355
-recovered Augustus_model.g42175.t1, internal, 665, 765
Valid prediction for GlimmerHMM_glimmerT_63212-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63212-T1 208-505-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1124
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support