-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2776

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 53, 330
Couldn't classify 847, 1035
Sorry, prediction snap_scaffold_2776-snap.2-T1 fails validation.
(GAT)	 AG	53-330	GT	GGG
(TAC)	 AG	847-1035	GT	AGG
-recovered snap_scaffold_2776-snap.2-T1, internal, 53, 330
-recovered snap_scaffold_2776-snap.2-T1, internal, 847, 1035
Couldn't classify 847, 1004
Sorry, prediction Augustus_model.g42174.t1 fails validation.
(ATG)	 GG	54-261	GT	CTG
(TAC)	 AG	847-1004	GT	AGG
-recovered Augustus_model.g42174.t1, initial, 54, 261
-recovered Augustus_model.g42174.t1, internal, 847, 1004
Couldn't classify 45, 330
Couldn't classify 847, 1035
Sorry, prediction GeneMark_model.110587_t fails validation.
(TTC)	 AG	45-330	GT	GGG
(TAC)	 AG	847-1035	GT	AGG
-recovered GeneMark_model.110587_t, internal, 45, 330
-recovered GeneMark_model.110587_t, internal, 847, 1035
Couldn't classify 847, 1004
Sorry, prediction GlimmerHMM_glimmerT_63211-T1 fails validation.
(ATG)	 GG	54-330	GT	GGG
(TAC)	 AG	847-1004	GT	AGG
-recovered GlimmerHMM_glimmerT_63211-T1, initial, 54, 330
-recovered GlimmerHMM_glimmerT_63211-T1, internal, 847, 1004

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 195, 276
Sorry, prediction snap_scaffold_2776-snap.1-T1 fails validation.
(CAG)	 AG	195-276	GT	AGG
(CCA)	 AG	832-1085	CC	AGC
-recovered snap_scaffold_2776-snap.1-T1, terminal, 832, 1085
-recovered snap_scaffold_2776-snap.1-T1, internal, 195, 276

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 931, rend_intergenic: 53  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1125
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 931, rend_intergenic: 53  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support