-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2775

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 886, 1067
Sorry, prediction snap_scaffold_2775-snap.2-T1 fails validation.
(CTG)	 AG	886-1067	GT	AGG
-recovered snap_scaffold_2775-snap.2-T1, internal, 886, 1067

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 51
Sorry, prediction GeneMark_model.110586_t fails validation.
(AGG)	 AG	37-51	GT	CAG
(GGG)	 AG	282-509	GT	GAG
(GAA)	 AG	541-574	GT	CAG
(GGT)	 AG	602-652	CA	GAC
-recovered GeneMark_model.110586_t, terminal, 602, 652
-recovered GeneMark_model.110586_t, internal, 37, 51
-recovered GeneMark_model.110586_t, internal, 282, 509
-recovered GeneMark_model.110586_t, internal, 541, 574
Valid prediction for snap_scaffold_2775-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63210-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1125
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support