-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2774

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63209-T1
Couldn't classify 62, 129
Couldn't classify 959, 1004
Sorry, prediction GeneMark_model.110585_t fails validation.
(GAG)	 AG	62-129	GT	GAG
(AGA)	 AG	255-302	GT	CAG
(GGC)	 AG	622-696	GT	GAG
(ACC)	 AG	783-833	GT	GAG
(AGT)	 AG	959-1004	GT	GAG
-recovered GeneMark_model.110585_t, internal, 62, 129
-recovered GeneMark_model.110585_t, internal, 255, 302
-recovered GeneMark_model.110585_t, internal, 622, 696
-recovered GeneMark_model.110585_t, internal, 783, 833
-recovered GeneMark_model.110585_t, internal, 959, 1004
Couldn't classify 375, 526
Couldn't classify 959, 1073
Sorry, prediction snap_scaffold_2774-snap.1-T1 fails validation.
(GAA)	 AG	375-526	GT	AGG
(GGG)	 AG	592-708	GT	TGG
(ATC)	 AG	793-833	GT	GAG
(AGT)	 AG	959-1073	GT	CAG
-recovered snap_scaffold_2774-snap.1-T1, internal, 375, 526
-recovered snap_scaffold_2774-snap.1-T1, internal, 592, 708
-recovered snap_scaffold_2774-snap.1-T1, internal, 793, 833
-recovered snap_scaffold_2774-snap.1-T1, internal, 959, 1073

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1125
-exon list size: 23


building trellis

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32.0    
36.0    
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44.0    
48.0    
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56.0    
60.0    
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68.0    
72.0    
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80.0    
84.0    
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92.0    
96.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support