-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2772

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 498, 577
Couldn't classify 895, 1083
Sorry, prediction snap_scaffold_2772-snap.1-T1 fails validation.
(GAG)	 AG	498-577	GT	ATG
(GGT)	 AG	895-1083	GT	AGG
-recovered snap_scaffold_2772-snap.1-T1, internal, 498, 577
-recovered snap_scaffold_2772-snap.1-T1, internal, 895, 1083
Couldn't classify 498, 577
Couldn't classify 895, 1110
Sorry, prediction GeneMark_model.110583_t fails validation.
(GAG)	 AG	498-577	GT	ATG
(GGT)	 AG	895-1110	GT	GGG
-recovered GeneMark_model.110583_t, internal, 498, 577
-recovered GeneMark_model.110583_t, internal, 895, 1110
Couldn't classify 498, 577
Couldn't classify 895, 1083
Sorry, prediction Augustus_model.g42173.t1 fails validation.
(GAG)	 AG	498-577	GT	ATG
(GGT)	 AG	895-1083	GT	AGG
-recovered Augustus_model.g42173.t1, internal, 498, 577
-recovered Augustus_model.g42173.t1, internal, 895, 1083

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1125
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support