-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2767

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 110, 219
Couldn't classify 954, 1004
Sorry, prediction GeneMark_model.110580_t fails validation.
(TCC)	 AG	110-219	GT	GCG
(TGA)	 AG	554-568	GT	CAG
(TGA)	 AG	590-718	GT	GAG
(GGA)	 AG	760-786	GT	CAG
(AGA)	 AG	812-832	GT	CAG
(ACA)	 AG	858-872	GT	CAG
(TGC)	 AG	894-932	GT	CAG
(TGA)	 AG	954-1004	GT	CAG
-recovered GeneMark_model.110580_t, internal, 110, 219
-recovered GeneMark_model.110580_t, internal, 554, 568
-recovered GeneMark_model.110580_t, internal, 590, 718
-recovered GeneMark_model.110580_t, internal, 760, 786
-recovered GeneMark_model.110580_t, internal, 812, 832
-recovered GeneMark_model.110580_t, internal, 858, 872
-recovered GeneMark_model.110580_t, internal, 894, 932
-recovered GeneMark_model.110580_t, internal, 954, 1004

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63207-T1
Couldn't classify 826, 1022
Sorry, prediction Augustus_model.g42171.t1 fails validation.
(GTG)	 AG	826-1022	GT	AGG
-recovered Augustus_model.g42171.t1, internal, 826, 1022
Couldn't classify 826, 1069
Sorry, prediction snap_scaffold_2767-snap.1-T1 fails validation.
(GTG)	 AG	826-1069	GT	AGG
-recovered snap_scaffold_2767-snap.1-T1, internal, 826, 1069

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1126
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support