-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2765

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 71, 86
Couldn't classify 1072, 1092
Sorry, prediction GeneMark_model.110579_t fails validation.
(AGG)	 AG	71-86	GT	GGG
(ACA)	 AG	107-166	GT	GGG
(AGG)	 AG	191-286	GT	GGG
(GGA)	 AG	1025-1045	GT	TTG
(GGA)	 AG	1072-1092	GT	TTG
-recovered GeneMark_model.110579_t, internal, 71, 86
-recovered GeneMark_model.110579_t, internal, 107, 166
-recovered GeneMark_model.110579_t, internal, 191, 286
-recovered GeneMark_model.110579_t, internal, 1025, 1045
-recovered GeneMark_model.110579_t, internal, 1072, 1092

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 242, 334
Sorry, prediction snap_scaffold_2765-snap.1-T1 fails validation.
(GGC)	 AG	242-334	GT	CGG
(ACC)	 AG	810-1091	GA	GAG
-recovered snap_scaffold_2765-snap.1-T1, terminal, 810, 1091
-recovered snap_scaffold_2765-snap.1-T1, internal, 242, 334
Couldn't classify 242, 334
Sorry, prediction GlimmerHMM_glimmerT_63206-T1 fails validation.
(GGC)	 AG	242-334	GT	CGG
(ACC)	 AG	810-1091	GA	GAG
-recovered GlimmerHMM_glimmerT_63206-T1, terminal, 810, 1091
-recovered GlimmerHMM_glimmerT_63206-T1, internal, 242, 334

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1126
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support