-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2764

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1052, 1066
Sorry, prediction GeneMark_model.110578_t fails validation.
(ATG)	 GG	746-756	GT	GAG
(GGG)	 AG	777-824	GT	ATG
(ACA)	 AG	902-922	GT	GAG
(GCA)	 AG	956-970	GT	GAG
(GTA)	 AG	1004-1018	GT	GAG
(ATA)	 AG	1052-1066	GT	GCG
-recovered GeneMark_model.110578_t, initial, 746, 756
-recovered GeneMark_model.110578_t, internal, 777, 824
-recovered GeneMark_model.110578_t, internal, 902, 922
-recovered GeneMark_model.110578_t, internal, 956, 970
-recovered GeneMark_model.110578_t, internal, 1004, 1018
-recovered GeneMark_model.110578_t, internal, 1052, 1066

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 389, 556
Couldn't classify 966, 1100
Sorry, prediction snap_scaffold_2764-snap.1-T1 fails validation.
(ACT)	 AG	389-556	GT	CGG
(ACT)	 AG	966-1100	GT	GGG
-recovered snap_scaffold_2764-snap.1-T1, internal, 389, 556
-recovered snap_scaffold_2764-snap.1-T1, internal, 966, 1100
Couldn't classify 389, 556
Couldn't classify 966, 1100
Sorry, prediction Augustus_model.g42169.t1 fails validation.
(ACT)	 AG	389-556	GT	CGG
(ACT)	 AG	966-1100	GT	GGG
-recovered Augustus_model.g42169.t1, internal, 389, 556
-recovered Augustus_model.g42169.t1, internal, 966, 1100
Valid prediction for GeneMark_model.110577_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1126
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support