-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2761

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 48
Sorry, prediction GeneMark_model.110574_t fails validation.
(AAA)	 AG	34-48	GT	GTG
(GGG)	 AG	76-153	GT	ATG
(AAA)	 AG	183-197	GT	GTG
(GAG)	 AG	247-261	GT	GAG
(GAG)	 AG	284-295	GT	GAG
(GAG)	 AG	322-372	GT	GAG
(GAG)	 AG	403-438	GT	GAG
(ATG)	 AG	461-464	GC	GAG
-recovered GeneMark_model.110574_t, initial, 461, 464
-recovered GeneMark_model.110574_t, terminal, 461, 464
-recovered GeneMark_model.110574_t, internal, 34, 48
-recovered GeneMark_model.110574_t, internal, 76, 153
-recovered GeneMark_model.110574_t, internal, 183, 197
-recovered GeneMark_model.110574_t, internal, 247, 261
-recovered GeneMark_model.110574_t, internal, 284, 295
-recovered GeneMark_model.110574_t, internal, 322, 372
-recovered GeneMark_model.110574_t, internal, 403, 438
-recovered GeneMark_model.110574_t, internal, 461, 464

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1127
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support