-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_276

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61622-T1
Couldn't classify 964, 984
Sorry, prediction GeneMark_model.107159_t fails validation.
(AGA)	 AG	964-984	GC	AGG
(AGA)	 AG	1010-1177	GT	GAG
(ATC)	 AG	1198-1210	GT	AAG
add_exon() Sorry, GeneMark_model.107159_t 1010-1177-terminal-1 is invalid.
-recovered GeneMark_model.107159_t, terminal, 1010, 1177
-recovered GeneMark_model.107159_t, terminal, 1198, 1210
-recovered GeneMark_model.107159_t, internal, 964, 984
-recovered GeneMark_model.107159_t, internal, 1010, 1177
-recovered GeneMark_model.107159_t, internal, 1198, 1210
Valid prediction for GeneMark_model.107160_t
Valid prediction for snap_scaffold_276-snap.1-T1
add_exon() Sorry, snap_scaffold_276-snap.1-T1 2618-2879-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8699
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support