-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2757

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 434, 653
Sorry, prediction snap_scaffold_2757-snap.1-T1 fails validation.
(CTA)	 AG	434-653	GT	AGG
-recovered snap_scaffold_2757-snap.1-T1, internal, 434, 653
Couldn't classify 16, 37
Couldn't classify 512, 653
Sorry, prediction GeneMark_model.110570_t fails validation.
(AGA)	 AG	16-37	GT	AGG
(AGG)	 AG	58-75	GT	AGG
(AGA)	 AG	96-101	GT	AGG
(AGA)	 AG	124-129	GT	AAG
(AGA)	 AG	152-179	GT	AGG
(GGG)	 AG	512-653	GT	AGG
-recovered GeneMark_model.110570_t, internal, 16, 37
-recovered GeneMark_model.110570_t, internal, 58, 75
-recovered GeneMark_model.110570_t, internal, 96, 101
-recovered GeneMark_model.110570_t, internal, 124, 129
-recovered GeneMark_model.110570_t, internal, 152, 179
-recovered GeneMark_model.110570_t, internal, 512, 653

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1128
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support