-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2755

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 133
Couldn't classify 273, 372
Sorry, prediction snap_scaffold_2755-snap.1-T1 fails validation.
(AGG)	 AG	35-133	GT	CTG
(ATG)	 AG	273-372	GT	AGG
add_exon() Sorry, snap_scaffold_2755-snap.1-T1 273-372-initial-1 is invalid.
-recovered snap_scaffold_2755-snap.1-T1, initial, 273, 372
-recovered snap_scaffold_2755-snap.1-T1, internal, 35, 133
-recovered snap_scaffold_2755-snap.1-T1, internal, 273, 372
Couldn't classify 35, 133
Sorry, prediction GeneMark_model.110569_t fails validation.
(AGG)	 AG	35-133	GT	CTG
(ATG)	 AG	273-354	GT	ATG
(GGG)	 AG	468-490	GT	AGG
(AGG)	 AG	632-683	GG	GAG
-recovered GeneMark_model.110569_t, initial, 273, 354
-recovered GeneMark_model.110569_t, terminal, 632, 683
-recovered GeneMark_model.110569_t, internal, 35, 133
-recovered GeneMark_model.110569_t, internal, 273, 354
-recovered GeneMark_model.110569_t, internal, 468, 490

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1128
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support