-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2752

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 74, 307
Sorry, prediction Augustus_model.g42167.t1 fails validation.
(GCC)	 AG	74-307	GT	GGG
(GTC)	 AG	935-1093	TA	AGT
-recovered Augustus_model.g42167.t1, terminal, 935, 1093
-recovered Augustus_model.g42167.t1, internal, 74, 307
Couldn't classify 74, 307
Couldn't classify 935, 1042
Sorry, prediction GeneMark_model.110567_t fails validation.
(GCC)	 AG	74-307	GT	GGG
(GTC)	 AG	935-1042	GT	AGG
-recovered GeneMark_model.110567_t, internal, 74, 307
-recovered GeneMark_model.110567_t, internal, 935, 1042
Couldn't classify 74, 307
Sorry, prediction snap_scaffold_2752-snap.1-T1 fails validation.
(GCC)	 AG	74-307	GT	GGG
(GTC)	 AG	935-1093	TA	AGT
-recovered snap_scaffold_2752-snap.1-T1, terminal, 935, 1093
-recovered snap_scaffold_2752-snap.1-T1, internal, 74, 307
Couldn't classify 935, 1042
Sorry, prediction GlimmerHMM_glimmerT_63202-T1 fails validation.
(ATG)	 CC	254-307	GT	GGG
(GTC)	 AG	935-1042	GT	AGG
-recovered GlimmerHMM_glimmerT_63202-T1, initial, 254, 307
-recovered GlimmerHMM_glimmerT_63202-T1, internal, 935, 1042

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1128
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support