-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_275

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8432, 8567
Sorry, prediction GlimmerHMM_glimmerT_61621-T1 fails validation.
(ATG)	 TT	8050-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered GlimmerHMM_glimmerT_61621-T1, initial, 8050, 8235
-recovered GlimmerHMM_glimmerT_61621-T1, internal, 8432, 8567
Couldn't classify 41, 103
Couldn't classify 8432, 8567
Sorry, prediction snap_scaffold_275-snap.1-T1 fails validation.
(ACT)	 AG	41-103	GT	CAG
(GCG)	 AG	4572-4619	GT	CGG
(GGC)	 AG	5001-5158	GT	AGG
(TGC)	 AG	5685-5831	GT	AGG
(CGT)	 AG	8073-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered snap_scaffold_275-snap.1-T1, internal, 41, 103
-recovered snap_scaffold_275-snap.1-T1, internal, 4572, 4619
-recovered snap_scaffold_275-snap.1-T1, internal, 5001, 5158
-recovered snap_scaffold_275-snap.1-T1, internal, 5685, 5831
-recovered snap_scaffold_275-snap.1-T1, internal, 8073, 8235
-recovered snap_scaffold_275-snap.1-T1, internal, 8432, 8567
Valid prediction for GlimmerHMM_glimmerT_61620-T1
Couldn't classify 8432, 8567
Sorry, prediction GeneMark_model.107158_t fails validation.
(ATG)	 TT	8050-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered GeneMark_model.107158_t, initial, 8050, 8235
-recovered GeneMark_model.107158_t, internal, 8432, 8567
Couldn't classify 8432, 8567
Sorry, prediction Augustus_model.g40971.t1 fails validation.
(ATG)	 GC	4737-4796	GT	GTG
(GGC)	 AG	5001-5158	GT	AGG
(TGC)	 AG	5685-5831	GT	AGG
(CGT)	 AG	8073-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered Augustus_model.g40971.t1, initial, 4737, 4796
-recovered Augustus_model.g40971.t1, internal, 5001, 5158
-recovered Augustus_model.g40971.t1, internal, 5685, 5831
-recovered Augustus_model.g40971.t1, internal, 8073, 8235
-recovered Augustus_model.g40971.t1, internal, 8432, 8567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107157_t
Valid prediction for GeneMark_model.107156_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8699
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support