-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2747

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 139, 278
Sorry, prediction Augustus_model.g42166.t1 fails validation.
(CGA)	 AG	139-278	GT	GGG
(CAG)	 AG	393-462	GT	AGG
(TTG)	 AG	685-744	GT	AGG
(CCG)	 AG	881-1093	TC	GAT
-recovered Augustus_model.g42166.t1, terminal, 881, 1093
-recovered Augustus_model.g42166.t1, internal, 139, 278
-recovered Augustus_model.g42166.t1, internal, 393, 462
-recovered Augustus_model.g42166.t1, internal, 685, 744
Couldn't classify 139, 462
Sorry, prediction snap_scaffold_2747-snap.1-T1 fails validation.
(CGA)	 AG	139-462	GT	AGG
(CCG)	 AG	881-1093	TC	GAT
-recovered snap_scaffold_2747-snap.1-T1, terminal, 881, 1093
-recovered snap_scaffold_2747-snap.1-T1, internal, 139, 462
Couldn't classify 391, 462
Couldn't classify 881, 1078
Sorry, prediction pasa_asmbl_37196.p1 fails validation.
(AGC)	 AT	391-462	GT	AGG
(TTG)	 AG	685-744	GT	AGG
(CCG)	 AG	881-1078	GA	CCG
-recovered pasa_asmbl_37196.p1, internal, 685, 744

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110563_t
Couldn't classify 85, 178
Sorry, prediction GeneMark_model.110564_t fails validation.
(CAG)	 AG	85-178	GT	GGG
(GAG)	 AG	512-544	GT	AGG
(AGG)	 AG	567-672	AC	GAA
-recovered GeneMark_model.110564_t, terminal, 567, 672
-recovered GeneMark_model.110564_t, internal, 85, 178
-recovered GeneMark_model.110564_t, internal, 512, 544
Valid prediction for GlimmerHMM_glimmerT_63201-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1130
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support