-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2744

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 65
Couldn't classify 803, 1094
Sorry, prediction GeneMark_model.110561_t fails validation.
(TAA)	 AG	35-65	GT	ATG
(AGC)	 AG	128-192	GT	CAG
(GGA)	 AG	220-246	GT	CTG
(AGA)	 AG	271-309	GT	AGG
(ACA)	 AG	803-1094	GT	AGG
-recovered GeneMark_model.110561_t, internal, 35, 65
-recovered GeneMark_model.110561_t, internal, 128, 192
-recovered GeneMark_model.110561_t, internal, 220, 246
-recovered GeneMark_model.110561_t, internal, 271, 309
-recovered GeneMark_model.110561_t, internal, 803, 1094
Couldn't classify 795, 1106
Sorry, prediction snap_scaffold_2744-snap.1-T1 fails validation.
(ATG)	 TG	199-246	GT	CTG
(GTG)	 AG	795-1106	GT	AGG
-recovered snap_scaffold_2744-snap.1-T1, initial, 199, 246
-recovered snap_scaffold_2744-snap.1-T1, internal, 795, 1106

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1131
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support