-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2735

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63198-T1
Couldn't classify 28, 740
Couldn't classify 1086, 1093
Sorry, prediction GeneMark_model.110557_t fails validation.
(CCC)	 AG	28-740	GT	AGG
(GGT)	 AG	962-1056	GT	CTG
(GAA)	 AG	1086-1093	GT	GGG
-recovered GeneMark_model.110557_t, internal, 28, 740
-recovered GeneMark_model.110557_t, internal, 962, 1056
-recovered GeneMark_model.110557_t, internal, 1086, 1093
Valid prediction for Augustus_model.g42165.t1
Valid prediction for snap_scaffold_2735-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1132
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support