-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2731

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42164.t1
Valid prediction for GlimmerHMM_glimmerT_63197-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 55
Couldn't classify 1062, 1098
Sorry, prediction GeneMark_model.110555_t fails validation.
(TCA)	 AG	38-55	GT	GAG
(TCA)	 AG	78-95	GT	GAG
(GGG)	 AG	120-134	GT	GAG
(AGA)	 AG	867-872	GT	AGG
(AGG)	 AG	903-908	GT	AGG
(AGG)	 AG	930-935	GT	AGG
(AGA)	 AG	959-1000	GT	AGG
(GGG)	 AG	1033-1038	GT	AGG
(TGA)	 AG	1062-1098	GT	AGG
-recovered GeneMark_model.110555_t, internal, 38, 55
-recovered GeneMark_model.110555_t, internal, 78, 95
-recovered GeneMark_model.110555_t, internal, 120, 134
-recovered GeneMark_model.110555_t, internal, 867, 872
-recovered GeneMark_model.110555_t, internal, 903, 908
-recovered GeneMark_model.110555_t, internal, 930, 935
-recovered GeneMark_model.110555_t, internal, 959, 1000
-recovered GeneMark_model.110555_t, internal, 1033, 1038
-recovered GeneMark_model.110555_t, internal, 1062, 1098
Valid prediction for snap_scaffold_2731-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1133
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support