-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_273

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107152_t
Valid prediction for GlimmerHMM_glimmerT_61617-T1
Valid prediction for GeneMark_model.107150_t
Valid prediction for snap_scaffold_273-snap.4-T1
Couldn't classify 8682, 8697
Sorry, prediction GeneMark_model.107153_t fails validation.
(ATG)	 AT	8122-8125	GT	GAG
(GGC)	 AG	8146-8353	GT	GGG
(GCG)	 AG	8440-8548	GT	AGG
(AGC)	 AG	8609-8619	GT	AGG
(AGG)	 AG	8640-8648	GT	GAG
(ACA)	 AG	8682-8697	GC	ACG
-recovered GeneMark_model.107153_t, initial, 8122, 8125
-recovered GeneMark_model.107153_t, internal, 8146, 8353
-recovered GeneMark_model.107153_t, internal, 8440, 8548
-recovered GeneMark_model.107153_t, internal, 8609, 8619
-recovered GeneMark_model.107153_t, internal, 8640, 8648
-recovered GeneMark_model.107153_t, internal, 8682, 8697
Valid prediction for snap_scaffold_273-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40969.t1
Valid prediction for GeneMark_model.107149_t
Valid prediction for Augustus_model.g40968.t1
Valid prediction for GlimmerHMM_glimmerT_61618-T1
Valid prediction for GeneMark_model.107151_t
Valid prediction for snap_scaffold_273-snap.5-T1
Valid prediction for snap_scaffold_273-snap.3-T1
Couldn't classify 5763, 5786
Sorry, prediction snap_scaffold_273-snap.2-T1 fails validation.
(ATG)	 AC	4755-5063	GT	TGG
(AGT)	 AG	5763-5786	GT	AGG
-recovered snap_scaffold_273-snap.2-T1, initial, 4755, 5063
-recovered snap_scaffold_273-snap.2-T1, internal, 5763, 5786

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4230, rend_intergenic: 2938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8377, rend_intergenic: 4261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8723
-exon list size: 76


building trellis

1.3    
2.6    
3.8    
5.1    
6.4    
7.7    
9.0    
10.3    
11.5    
12.8    
14.1    
15.4    
16.7    
17.9    
19.2    
20.5    
21.8    
23.1    
24.4    
25.6    
26.9    
28.2    
29.5    
30.8    
32.1    
33.3    
34.6    
35.9    
37.2    
38.5    
39.7    
41.0    
42.3    
43.6    
44.9    
46.2    
47.4    
48.7    
50.0    
51.3    
52.6    
53.8    
55.1    
56.4    
57.7    
59.0    
60.3    
61.5    
62.8    
64.1    
65.4    
66.7    
67.9    
69.2    
70.5    
71.8    
73.1    
74.4    
75.6    
76.9    
78.2    
79.5    
80.8    
82.1    
83.3    
84.6    
85.9    
87.2    
88.5    
89.7    
91.0    
92.3    
93.6    
94.9    
96.2    
97.4    
98.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4230, rend_intergenic: 2938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8377, rend_intergenic: 4261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support