-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2728

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 784, 968
Sorry, prediction snap_scaffold_2728-snap.1-T1 fails validation.
(ATG)	 GG	460-486	GT	AGG
(GAC)	 AG	784-968	GT	AGG
-recovered snap_scaffold_2728-snap.1-T1, initial, 460, 486
-recovered snap_scaffold_2728-snap.1-T1, internal, 784, 968
Couldn't classify 784, 968
Sorry, prediction GeneMark_model.110554_t fails validation.
(ATG)	 GG	460-486	GT	AGG
(GAC)	 AG	784-968	GT	AGG
-recovered GeneMark_model.110554_t, initial, 460, 486
-recovered GeneMark_model.110554_t, internal, 784, 968
Valid prediction for GeneMark_model.110553_t
add_exon() Sorry, GeneMark_model.110553_t 43-220-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63196-T1
Valid prediction for Augustus_model.g42163.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1135
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support